<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03997

Description Uncharacterized protein
SequenceMGVSSTARLPSLGAQSIPPLFSHLQHTSNAKVVARWSITIRSFRAVPVPTNAWPSSNQYDSPSSSALSDDAPQNTASNLGPTSGSSHQAGLPGNATSSGGGAGSSVSGAPPLTKPRTMWQVWLSDHPGVLFVVVEDTGRPSRAKVWRDWEISTKKWRKQRRQEIKARKKQETQKEGEHAQTQLVDETGGMEGRTNQSDGKTAVQTDTSEQDKAEPMDVDPATSSTVASTIQTDGKSTAAQAHSNVEASELQAEAVPDVTESIEQEPIETAGPKPKLRLPSHTRYTVSAVTSSMSSMLTGLNLPPPHGAPVGTAGPGAWVPRGAAVSIEGLVLEINSQSLNALPGISPALASLSTTDDAALISSNSGGSSGGAGVDWRVRVGSVMGGGGRSAGAIVEAEFLPASTLLPTSKFMHDFLLSLFPPGLVPMPPPAASMPAPGVPTINSLRGTAAPSRAGSATGTPRDHHATLGAAPAANGNAAGVGALASASGFSYTIGGAAGTAVAPPNRNFNIPVVSDQLWEEVVPRSGESWRKRIAKRSQQMRLSARAQRRKRNNAATASAKQIGPSIQNATKQSNGDTDAFAWRTLGSEDEAETTAPSRTNGEEKQDDSDDALSSSDSEAEPTLISSSAAMPVPGVLTAAPKTVKKEDATVQLLFQGLRPDVDEAGSSSEQDGWTAGVERGRRIAFQYVQMLRAEGII
Length698
PositionHead
OrganismSporisorium scitamineum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium.
Aromaticity0.04
Grand average of hydropathy-0.436
Instability index52.56
Isoelectric point6.31
Molecular weight72616.68
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03997
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     305.36|      64|      92|     329|     392|       1
---------------------------------------------------------------------------
   47-  103 (67.57/24.46)	.....PVPT...NAWPSSnqydSPSSSALS..D...DAPQnTASNLGptsGSSHQAGLP.....GNATSSGG.GAG
  213-  252 (32.95/ 8.54)	........AEPMDVDPAT....SSTVASTIQTDgksTAAQ.AHSNVE...ASELQA....................
  329-  392 (109.46/43.72)	GLV.LEINSQSLNALPGI....SPALASLSTTD...DAAL.ISSNSG...GSSGGAGVDWRVRVGSVMGGGGRSAG
  423-  480 (95.38/37.24)	GLVpMPPPAASMPA.PGV.....PTINSLRGT.....AA....PSRA...GSATGTPRDHHATLGAAPAANGNAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.30|      60|     367|     134|     209|       3
---------------------------------------------------------------------------
  149-  209 (100.50/83.97)	WE....ISTKKWRK...QRRQEIKARKKQETQKEgEHAQTQLVDETG.GMEGRTNQSDGKT...AVQTDTSE
  519-  589 (84.80/42.62)	WEevvpRSGESWRKriaKRSQQMRLSARAQRRKR.NNAATASAKQIGpSIQNATKQSNGDTdafAWRTLGSE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03997 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEVVPRSGESWRKRIAKRSQQMRLSARAQRRKRNNAATASAKQIGPSIQNATKQSNGDTDAFAWRTLGSEDEAETTAPSRTNGEEKQDDSDDALSSSDSEAEPTLISSSAAMPVPGVLTAAPKT
2) MPPPAASMPAPGVPTINSLRGTAAPSRAGSATGTPRDHHATLGAAPAA
3) NAWPSSNQYDSPSSSALSDDAPQNTASNLGPTSGSSHQAGLPGNATSSGGGAGSSVSGAPPLTKPRTMWQ
4) SRAKVWRDWEISTKKWRKQRRQEIKARKKQETQKEGEHAQTQLVDETGGMEGRTNQSDGKTAVQTDTSEQDKAEPMDVDPATSSTVASTIQTDGKSTAAQAHSNVEASELQAEAVPDVTESIEQEPIETAGPKPKLRLPSHTRYT
520
427
51
141
643
474
120
285










Molecular Recognition Features






MoRF SequenceStartStop




1) SWRKRIAKR
529
537