Description | Mediator of RNA polymerase II transcription subunit 13 (Fragment) |
Sequence | VDPSQSSNPLKRIAWPARYCFKRTRAASSTYFEGVNSPIKDSDDPLQFAEDWLAEAGSRNEKLASRSSALSQAQQNKDMSTPKTDIPDNIESLARIAQYPDLQAASLVYPTPPDGALVQGMIHIGSDMFGTEGSDLAASQTPGERLPVKREEQTSDVIVSGFGPSNGLGVGSGMYDTNDDEDLFGEMNEKDFGSKGISDADFSFFDEPDFGSLDNDRAKGDTQEHQQTSSLSQVPEAKAAPEDIPAEKSLESQGISVEPAETDIGAVAAPKSNLTVDTSVKAPSGPQETLPEDRPPSRSRQTISPPLSPVEIKKILFSNPQSGQPGRGEGSGNPTIDKNARRQSNYDPVAFQQDLAMSDRKYGANGRFFFSEKTNAATAATREDTQIPTVGFPRGQKSRSENHIDHRATGSQQQTPIHSTQPRLRSPSVSSDETTDDTSDDISQRAASPTRFTGLKRKRPASQADNSTTSSSEGLSTAPDVDVTTSKEENSVFLGNFLSAFSDWSLAGYFSTRQNQFSPVLLRKEDQIQLAQLMVDQVTQSSLCHKVDGCMGLPDLEHDALSLRTFLEDTTIMGDIERLDLKTYVSLQDSSHIAANESSRQNTQRKDIKGSITKLPPPHLRIHRGRDFLEVLPPAISFWETFGFEPANGTKNISAYCIYPQNAKEGADAFLDRLGFLYSSCNLGKHVRGDRSKTFENGLGAWHVTLGGNSGYLSTMQSLRTLCEGLGTALSKAPPVRDNFVIYIINPFTHGAALADICSAFLQLFQKYVGDVDRHQARQQLNELVLQVVPMSFISSPSSLVVPTQTEYLNLALEVYNRCPPKDTSSGVMGCAPPVLLAESVPKSINFRLAPERTSPFQEGKCLHLALSRSLDQRWISAAWSDGSGSCQVTLSYCLRTRGSSISRMVSDVRHEIWETTKDIMERTQTRWKIFLVRTEPTDQEDIDAWTGLVERYNQMRSMPVELTILSVNIAPGLRLELPSSQIQLNTMNSQTSSTPVTTPHAGMPSPDQFGGSAATPTSSSQGPANAPTPTDISSIMEPESDAVLIDAADESWGIILSHRLSNSLFMTEYRPALASGYLLRRKGVSESQGVVAMGVNLVYTQRPPASYETVLRETLGMYRDLATLARAKGTLHVQRNTLPWHIATAVKGQELLSYIL |
Length | 1157 |
Position | Kinase |
Organism | Rasamsonia emersonii CBS 393.64 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Trichocomaceae> Rasamsonia. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.490 |
Instability index | 50.94 |
Isoelectric point | 5.28 |
Molecular weight | 126452.51 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP03992 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 463.38| 138| 142| 292| 433| 1 --------------------------------------------------------------------------- 161- 316 (154.40/84.56) ..........GFG.PSNGLGVGSGMYDTNDDEDLFGE.....MNEKDFGSKGisdaDFsFFDEPDFG.SLDNDRakGDTQ.......EHQQTSSLSQVP.EAKAAPEDIPAEKS...LESQGISVEPaetdigavaapksnltvdtsvkapsgpqetlpEDRPPSRSRQTISPP.LSPVEIKKIL 318- 461 (215.24/130.02) SNPQSGQPGRGEG.SGNPTIDKNARRQSNYDPVAFQQDL..AMSDRKYGANG....RF.FFSEKTNA.ATAATR..EDTQIPTVGFPRGQKSRSENHIDHRATGSQQQTPIHSTqprLRSPSVSSDE..............................ttDDTSDDISQRAASPTrFTGLKRKRPA 462- 549 (93.74/44.86) SQADNSTTSSSEGlSTAPDVDVTTSKEEN...SVFLGNFlsAFSD..WSLAG.......YFSTRQNQfSPVLLR..KEDQIQLAQLMVDQVTQS..SLCHKVDG................................................................................. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 153.27| 47| 377| 598| 679| 2 --------------------------------------------------------------------------- 67- 115 (77.66/30.27) SSalSQAQQNKDMSTPKTDIPDNIESLARIAQYPD.LQAASLVYPT....PPDG 598- 649 (75.61/85.69) SS..RQNTQRKDIKGSITKLPPPHLRIHRGRDFLEvLPPAISFWETfgfePANG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGEMNEKDF 2) KGISDADFSFFDEP 3) PLQFAEDWLA 4) SNPLKRIAWPARYCFKRTRAASSTYFEGVN 5) SPPLSPVEIKKILFSNP | 184 195 45 7 304 | 192 208 54 36 320 |
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