<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03985

Description C6 transcription factor
SequenceMAAAPRERFAICLPVLTGLRRSSSSPRFLPAHNGYRRPQLLRLAARVSRTASTHCPWVARGRAARAVLQNPERTPFSPTTPPTPAALDWEKLPSPCPSLPVACALRQFSSDQAPPSPQCSLSTCQPPPEDPCQISLSRIDVQGTAMADQRSPPSSRPNFSNPWKPAPSSKGSSDVPDGRIAYTLTACIRCRQLRERARALEKEIAAAEKEIQHTADAELMVRGAGRIKFHPNDEPRYLGPSSGIAITRLVMEMAKQNTDSKSIKDVVPEITAQEIRDMFTKESSKPTSKVVPRRSGLRERQARMKLTATAGQAMLPTLHEPTFRQDVEDVFNGSTDPVKNFQLRMVIAISMQKISPDYAGLADSYYLAALPYLEASLKRMDLSSLQCLVLIAQYSLVTPTRTAAYWVVGLAVKLAQELRITEEATITKSPTGEPLNFLEIDMRRRLSWIVFSMEFGLSHSLGRPNAFCISHDHVDVKWFELVDDRFITPQGVLPGSKPVMAKCIAIHFFKMRLLQAEIRRTLYLNKRETPVDDQDPWFAQMLAKIDHWVASCPKNDAGSGLNESWFQGRRNTMIVMLFRPSPQIPEPSVNAARRCYDASVFNVGLQREQIATGSIDLTWAFTQSLFMAINTILWSLSYPEIRKEHPIEEVQSYLQVALEGVALAAERWPGVESALHLYKSLITACLKAYDTGESFVVHSPSNHPSPASAQDVTTPPNMSSPSSSTTTSFYPMHNAKSTGPSVSDGESYGTISRGPSAEPPPQFPPATTPSAPATQPLPKTLHLPQEVLPPHLQQGPPTQPLQESLYNLQPYAPAPASYSQANFDPTTPFNAFPSVLPGLPGWDPNYTAASTTASHLAYVDATVDPMLWLGSIGDQYSQYSNQPFPGRGRTLSQQEQIELMDSLEDNIPDVSAQLLDQTAIFYHSETLLRLMRSAGKIVVLVELVRSRTLLSNGVHDGSIDFTLAAERARLASLAVKLSPAAAHVTAGQPARGEAPLPAASRPALPNRAAALDTPGAVTCRGLCSPLPSSNYLLVTSLPPSSHQRASPIPQHLDRLLLRPSPIDVPPANTPSARRFSSVECRLLLRCLEARPSGPLSPSSPPVESLKANPSPPSSTAYNPQTPTSPPLMSVGAQSYASNFANSQTSPSHTTSQGQPLSSPPSSTPMSTQLSQPPTVSTTNSFPTPASSVSGHLVSATSADDLDSADKSSSGWRHSGASMNATNTADPMDLGQSEHRRSDHDRQWPGADSGSTNMEGRPMVHDEDMMDVDQKAGASTNRGDPSIESLQQDIGTAFHLCKTLPTISGPDPSLDLVSLYGLAPIGKSVMRADPVTGEKINRLRKSYEGKLKGLGLSGRNKPVKHEPGTPGGLRQLTMWPEEEWQNQKVIGKEIKVADVDSALHKLQMRAMKMEPGTVPNHEYWEDVLGHEKPSKHADAGKKAAATPAAPRQPVQANGTTPAAAAEPERTRPSRGKKRHYDDNSFVGYGEGYADDDDEGAFYSSEDKKKKRKKSDIGVLQDHMSKVSPPIPERSGTYGVGICHVFCFRVAEDRPVAGEKLLLRDDAVSSLQFTRRPDGHHHIDGAETIILYATQVSCLGMISFHFAGCPLCPAPVLSSGDKGIYNIALCCTIIMAQSSQQKRPFSSFRLLSFDIYGTLIDWETGILDALEPLRSRLPDGHPLRSDGLGLGAKFNAHEKRIQAAQPSLTYDAVLREAYVALAGELDALPDNDSGDVDAEGTAFAASIARWPAFPDTVPAMRKLKKLGYKLVPLSNVDRASFGKTLAGPLAGLKEPLSPDSDVPLDPFFDAIYTAQDIGSYKPDRRNFEYLIEHVQREFGVAKHEILHVAQSLFHDHEPAKAVGLESVWIARGDKDGESGMGGKVEEYVNTGRVAFGWKYRSLGEFADAVEKELRGD
Length1910
PositionHead
OrganismRasamsonia emersonii CBS 393.64
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Trichocomaceae> Rasamsonia.
Aromaticity0.07
Grand average of hydropathy-0.402
Instability index55.73
Isoelectric point6.76
Molecular weight208130.07
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03985
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     329.94|      45|      46|    1096|    1140|       1
---------------------------------------------------------------------------
   71-  116 (33.08/ 7.49)	.....................................PER............TPFSPTT..PPTPaaldweklpsPCPSLPvacaLRQFSSD............QAPP..S
  117-  165 (33.95/ 7.89)	P.QcSLSTcQP..P......................PEDPcqislsridvqgTAMA..D..QRSP..........PS..........S.RPNF............SNPwkP
  697-  731 (54.33/17.25)	V.H.SPSN.HP..S......................PASA.................QD..VTTP..........PNMSSP....SSSTTTSF..............Y..P
  732-  800 (49.79/15.17)	M.H.NAKStGP..SvsdgesygtisrgpsaepppqfPPAT............TPSAPAT..QPLP..........KTLHLP....QEVLPPHL..........QQGPPtqP
  801-  849 (38.92/10.17)	LqE.SLYNlQP..Y......................APAP............ASYSQANfdPTTP......fnafPSVLPG....LPGWDPNY...........TAA....
 1102- 1147 (70.01/24.45)	V.E.SLKA.NP..S......................PPSS............TAYNPQT..PTSP..........PLMSVG....AQSYASNFA........nSQTSP..S
 1148- 1200 (49.85/15.19)	H.T.TSQG.QPlsS......................PPSS............TPMSTQL...SQP..........PTVST.....TNSFPTP.AssvsghlvsATSAD..D
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.66|      25|      28|    1203|    1227|       3
---------------------------------------------------------------------------
 1203- 1227 (46.36/31.24)	SADKSSSGWRH.SGASMNATN.TADPM
 1232- 1258 (37.53/23.51)	SEHRRSDHDRQwPGADSGSTNmEGRPM
 1264- 1280 (26.78/14.09)	MMDVD....QK.AGAS...TN.RGDP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.92|      36|      40|    1377|    1414|       4
---------------------------------------------------------------------------
 1377- 1414 (58.84/32.56)	EEWQNqkVIGKEIKVADVDSALHKLQMRAMKMEP....GTVP
 1417- 1456 (59.08/27.92)	EYWED..VLGHEKPSKHADAGKKAAATPAAPRQPvqanGTTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.96|      38|     461|     455|     496|       6
---------------------------------------------------------------------------
  455-  496 (62.41/55.98)	FGLSHSLGRpnaFCISHDHVdVKWFELVDDRFITPQGVLPGS
  921-  958 (64.56/43.51)	FYHSETLLR...LMRSAGKI.VVLVELVRSRTLLSNGVHDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.73|      16|     460|    1305|    1334|       7
---------------------------------------------------------------------------
 1305- 1328 (16.80/18.75)	PDPSLDLVSLyglapiGKSVmrAD
 1766- 1781 (26.92/ 6.96)	PLSNVDRASF......GKTL..AG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.83|      11|     461|    1080|    1093|       8
---------------------------------------------------------------------------
   55-   65 (22.36/ 6.55)	CPWVARGRAAR
 1080- 1090 (21.47/15.09)	CRLLLRCLEAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.94|      17|      20|    1011|    1027|      11
---------------------------------------------------------------------------
 1011- 1027 (32.43/19.47)	LDTPGAVTCRGLCSPLP
 1033- 1049 (30.50/17.75)	LVTSLPPSSHQRASPIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.43|      15|    1073|     655|     669|      14
---------------------------------------------------------------------------
  655-  669 (28.50/17.79)	QVALEGVALAA..ERWP
 1729- 1745 (24.94/14.57)	DVDAEGTAFAAsiARWP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03985 with Med19 domain of Kingdom Fungi
Unable to open file!