Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDFLKTCTTNIHVVEDLAETALLLYRLRDERAGSTQKLKEARNAVSHLRREKVLCAIVEQDIYIFGDVSPEHTLELEDRYELVEEGTVGSQDETTSVNTKDIFLDAVEHAIAFSLAADSAITYVASWTWLYHDAEAENGSDADSGSIIKMHAEYTPTAALLLVPEILPASWLPIGHADEQVESHIILAPRGIPARRIAEARRKVWSDNAWKVNVSEALELDAIRTDNDTVWISVELQDSAGLCCLWPAELCLAPATATNLEFCAMTRRSDWRRWLVGLEEEDAFRNPLAVAEEWFKGAGEREQAVQNAVKASTSDPHSSQTHVSTAANDEEAMTSPPFMQRALDQQTAVSGIYPTPPDGMAQAPQTAHMNLGATPSVAHTDNTMSGVEMTSNTNDHAQSNGSDPDQSLDREDFELNQEDLFGDNSGGIEFGEDAVDDADFNFFDEPDDEPEQGTVASTEMDDESTHEHELEPVIAQDTVNELQPTSDDISTAAAVDSAVSEHLTLPTSDDTAGENVLTAGSDESRFATHTSEPEKALSPFGIRERLLPPPVPASLANTDSNDFARFRRHSTFAPIVFKNSFNLGPKYADTGLVDDEAQRPMIKSKIPNINLPPVKKKSRLLRQEVNMEPRMMDPNSESEEDSYESASSDSDDELPPKLPWDTRKRKRPSDEDRLQPLASSMERMLSDDDPGDDSETTESQHNADTMLEKCLTRASDGGMAVSLRNSSDNYSDCGPKNASDEESGDSSMRKVEELYSLRKEDLIYVAQIVHEQAMSMTRSSVAEQDLFSNGGSDPEKAQCGRISIAKAVESVFPDAAICDLVQLAATRDQAPRPTVPVKTPQGQPRMPQRSDSQIVLGPDYFPLPSPYVRIQRGADNWEMMSTCLSFWETLGLGPTNGPKNVRAFCVFPFNEDLQHLVAQFIGELGTSYENCKLGSYVHLRNVSDASLDSFEDGMAPVEVNEEEESVEGLLKAYATTCAELGKVLSTIGHEESDRTIVVYMLNPFSGRQALQHLCACFWVLFKAYRDNVPKALRNQCGSDIVLQVLPIKLVASFDELVVPEAKEIALLAREVYDRCPPSVSHNSETLSALPILAAPSVELANAAPKRIGFQLAAEPPSDLLHEGSILHLAYACSQDGHWLTVAWIDNTGQHQSTASFCLRGKTFSEVAEGVWDRTREILAARQVTWRVFIVTPDAMDTSLSHCWRSITSRRRPYPLCVTLLSVQLDPILHLSPPAVPLDTQFTWPTADGGFLTPASTPQAGNLTSSPNPGGDSTAPPTPAPSETMTAASIAENDPDAHLTDLTDETWGVLLSPKLAPFTSPFPGQANGALFRRGDPSPGEALPSLGVSVHWTIQVKPSGGVDDGSVKQAELTCREVLKMYRGLSVLTKARGLDGGRRGTEWVAPVHVAMVVRGVEGLEGFLEKDEKGES |
Length | 1428 |
Position | Kinase |
Organism | Zymoseptoria brevis |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Zymoseptoria. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.409 |
Instability index | 47.50 |
Isoelectric point | 4.58 |
Molecular weight | 156286.13 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP03972 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 260.08| 53| 60| 1232| 1284| 1 --------------------------------------------------------------------------- 655- 706 (87.81/38.16) PPKLPWD.TRKRKRPSDEDRLQPLASSM.ERMLSDDDPGDDSETTESQHNADTM 1232- 1284 (97.10/42.94) PPAVPLD.TQFTWPTADGGFLTPASTPQAGNLTSSPNPGGDSTAPPTPAPSETM 1294- 1341 (75.17/31.67) PDAHLTDlTDETWGVLLSPKLAPFTSPFPGQANGALFRRGD......PSPGEAL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 88.92| 19| 19| 330| 348| 2 --------------------------------------------------------------------------- 310- 327 (23.67/11.07) .KASTSDPHSSQTHVSTAA 330- 348 (33.77/19.32) EEAMTSPPFMQRALDQQTA 351- 367 (31.47/17.44) GIYPTPPDGMAQA..PQTA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.18| 18| 21| 469| 488| 3 --------------------------------------------------------------------------- 471- 488 (32.74/22.42) EPVIAQDT.VNE..LQPTSDD 490- 510 (21.44/ 6.17) STAAAVDSaVSEhlTLPTSDD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 254.89| 82| 162| 963| 1049| 4 --------------------------------------------------------------------------- 963- 1049 (130.22/115.42) EESVEGLlkAYAttCAELGKVLST..IGHEESDRTIVVYML..NPFS....G..RQALQHLCA..CFWVLFKAYRDNVPKALrNQCGSDIVLQVLPIKL 1122- 1215 (124.67/92.70) EGSILHL..AYA..CSQDGHWLTVawIDNTGQHQSTASFCLrgKTFSevaeGvwDRTREILAArqVTWRVFIVTPDAMDTSL.SHCWRSITSRRRPYPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 66.57| 20| 22| 162| 183| 5 --------------------------------------------------------------------------- 162- 183 (30.55/26.14) LVPEILPASwlPIGHADEQVES 187- 206 (36.02/22.25) LAPRGIPAR..RIAEARRKVWS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 35.01| 10| 23| 722| 731| 6 --------------------------------------------------------------------------- 722- 731 (17.64/12.51) SLRNSSDNYS 747- 756 (17.37/12.20) SMRKVEELYS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.88| 13| 23| 274| 286| 10 --------------------------------------------------------------------------- 274- 286 (24.42/16.98) WLVGL.EEEDAFRN 294- 307 (20.47/12.92) WFKGAgEREQAVQN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 69.86| 22| 25| 389| 413| 12 --------------------------------------------------------------------------- 392- 413 (40.15/26.96) NTND..HAQSNGSD.PDQSLDREDF 416- 440 (29.70/10.88) NQEDlfGDNSGGIEfGEDAVDDADF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.76| 14| 24| 207| 220| 15 --------------------------------------------------------------------------- 207- 220 (23.31/14.62) DNAW.KVNVSEALEL 228- 242 (19.44/10.85) DTVWiSVELQDSAGL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGIRERL 2) IEFGEDAVDDADFNFFDEPD 3) KKKSR 4) PNINLP 5) REDFELNQEDLFGD | 540 428 615 607 410 | 546 447 619 612 423 |
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