<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03937

Description Uncharacterized protein
SequenceMDIPQVVGGPSMGALPKGLLDFSPRIDSESPSQQEGTEWAAMVVNETGSAQRLQYNLMSSQTIRMPSLAANFVSGILKRRQALLEGAIPTSFRPPPRISMVDQRRENWFQALANPNIPLEKLSSSVPVGLRGRPLLDQCAQRKVDPLRATWLIRCIGSNELRSLRRKGTMAAGAVGAERKWMTEWTLQVGAFMDATVRECAAAVGEENAGAQERLRYMIDIVDNLYHEKLVNRQQYLDLIIDLISKSTIDKLPLLNILASRYLRDICAYNTLLVKFARVLLRKAADTETVHPRSIHTSVLSMLQAVNDKHSGCLSNGELSEDITHLLDKHTQSATDSLPIGWTPSASNSPQSHSSPSPPFLPPTRLHLSHRVNLLDSILPSIDLATYAQSYFTSPGSGSSFEQVSTICQWAISKYRFGVHRIYVASGLLSMGASFFGVGVRGDVEAFLEKLGSESGLEYELVPFLLGELERVGVYSYSHYLRRMLSLGLLRRQELVGSGWCPSMVLQAPIPVNAPGLRRQRNASLITAGISVDVEEQRLRSVMAELISLFSVQGEECFTSDLPMELKKQLRGLWRESKMQVAQTVTALAYESFENQIDSTDTSAAIRTLTLAIRVLELMDEYHGLFTALTSAYDVYKGPDFAGLATLTFRRHLAIWSAMGKLGDVHRSILKAVEQWPRSARMLRELRDFAVDAWAPKDVLDRISGTTVTNAQNEVQHHDIEDILSRVMRVSDLSAAEALAGDMKGDLNIDTTIFPRLCSAIFDGLTDLTASEDPNHEMHVRSQAHILVCCLRETDSPRLHQYICDWASGMLTFDESAATSMQRFMVSLSSHGCLPLPTATAALSNYMLRNTSITDDQIVIASIEKIIFILKALFTDTPQDLSLSLEEYVFLQHQRRTLRPDLADHVLRLLRCLMILSQKLRDPDGQQNVRNTMALPKMHSFIREACMRNPAIWQREFLKPLMNSAEAATVAQIMDFEQLVFETSGSYLQPQPRLQQIIDSTASMSLPFCQVQLQSCFEYGSKVEDMVAVLKWMIHYVLYEASNTDFCGELLRYLDLVSKRKICEFIEEDFLNNVSATLQASTQHTEVTLRRLKVMTTLYASVVESAPALNSLQVPLLKTAEDLCVQFFPQAWGKGQGPERVFMLSLELCLRMIKSGTSFSPESVLSASKTAFGNFCLQRDRVLLEAVEAIIRMCCAEHKKSCSALLKEMHKGGMAQIVSRGREVKGTDPWDAVEDGNACFLKL
Length1243
PositionKinase
OrganismSaitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Taphrinomycotina> Taphrinomycotina incertae sedis> Saitoella.
Aromaticity0.07
Grand average of hydropathy-0.089
Instability index48.42
Isoelectric point6.26
Molecular weight138771.11
Publications
PubMed=21914972
PubMed=24646756

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03937
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.92|      42|     156|      38|      88|       1
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   38-   88 (65.47/71.99)	EWAAMVVNETGSAQ.RLQYnlmssqtirMPSLAANFVSGILKRRQALLEGAI
  199-  241 (69.45/54.23)	ECAAAVGEENAGAQeRLRY.........MIDIVDNLYHEKLVNRQQYLDLII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.05|      47|     152|     743|     837|       2
---------------------------------------------------------------------------
  407-  457 (73.33/28.79)	ICQWAISKYRF......GVHRIYVAsgLLSMGASFFGvgVRGDVE...AFLEKLGSE..SGL
  743-  765 ( 7.57/55.63)	.......................................MKGDLNidtTIFPRLCSAifDGL
  803-  837 (39.15/18.32)	ICDWASGMLTFdesaatSMQRFMVS..LSSHGCLPLP.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.30|      26|     155|     773|     801|       3
---------------------------------------------------------------------------
  773-  801 (45.50/48.01)	DPNHEMHVRS.....QAHILV..CCLREtdsPRLHQ
  922-  954 (40.79/32.47)	DPDGQQNVRNtmalpKMHSFIreACMRN...PAIWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.62|      20|     156|     341|     365|       4
---------------------------------------------------------------------------
  341-  365 (35.72/30.37)	GWTPSASnspqsHSSPSPPFLPPTR
  499-  518 (40.90/22.64)	GWCPSMV.....LQAPIPVNAPGLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03937 with Med12 domain of Kingdom Fungi
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