<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03928

Description Uncharacterized protein
SequenceMPLPSFFSKEPEETKEDDAQGESAVDGIPPDSLTLAQLKALVSHMPKAKVPEYAFEYADTDNIKAELEEWFVYAENQYLLNGAQVFEKTFTGSWLKASSDARKSFVETQLGKFDTDNATERLRAGTCLVYICQGIFKETVSTEHQLHWIFENAKLVRSCGALDTMWGSLLHSCKVYDEREEGTTAVDIEVTRAELTNALTVLYFLTEIFRTDNGFRSQMSSLSPNPVSFLITELGKFRYRNPENCPIRQLLSFFWKVILTVFGGRKDLAKTKIWARKRMGLPEEMDHSTIVASPLDYNAFRQEIIAKFPAYEPPEPLLRLDPDATSLFPASLAIHAEPEEVSPITAAVNAATNPHPNAQNPLLATPAPSPPPSPRPSPKLPRSIFQTPANMPFQYPAGLGLEESVPESVREASEIYASRTRTALGVWQMWREKEEFERRERGWVYDDDDTDEVESDNEEERRLRRIEEVYNSTLPELQSFVVVLLKVLLATTNIDSSDDDTKSSPILISLSSDSKHLSETDIDERRTREIMAKTISATLLLLLKWFRVSHVFKFEYLAQLLVDSNSLLLLVKIFANDLSTAVAEKTEIKEQNFFRFCNLHSAQPQPPERTQGTTAGAALKKAAGAVGATSNWEMPDDGRQDHDTQPPVQIGEYSWRVFLATINYLKIMSKMVKRKAARNLLMVQYKASANLRKLLKIPHEELRVCTLKVMKCQVPFYGRKWRQSNMRIITSIYLHCRPELRDDWVAALDVDEQVETAQPQEQALRALVQFHHLRRYPVQMENMGFEGLRVEGERDFFGEELVRMGIDLEMEKMRLRGEMIEVEGREPNAELIDNLRDVRTVGGADTELDKITGIQRHRRMSKNTPLPTEEIDLSTIQWREPGWIAHPQFGRGSLRPDNVLDYFKLSVFWSRGCNNDVVLQQQIGQPHQYAMGTPEFTNMLKQLRGLEYVLAYHNMPDVFIIRAQERHSPNHATPLHLYFCANGNIYLAPSLHSILTSRTLNALRSVKEALTLTTSLANFDPAGAGYTYEFTKEEGDSEKVKEERREREMLEIALRAAEGSIREKEVVQAPIVKVEEVQGEGNGKKVRIA
Length1089
PositionHead
OrganismSaitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Taphrinomycotina> Taphrinomycotina incertae sedis> Saitoella.
Aromaticity0.08
Grand average of hydropathy-0.438
Instability index47.29
Isoelectric point5.55
Molecular weight123943.43
Publications
PubMed=21914972
PubMed=24646756

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03928
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.22|      32|      53|      59|      95|       1
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   59-   95 (48.07/40.74)	DTDNIKAELEEWFVYAenqYLLNGaqVFEKTFTG....SWL
  114-  149 (53.15/31.05)	DTDNATERLRAGTCLV...YICQG..IFKETVSTehqlHWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     774.02|     251|     582|     203|     469|       2
---------------------------------------------------------------------------
  203-  469 (406.55/295.07)	YFLTEIFRTDNGFRSQ..MSSLSPNPVSFLITELGKFRYRN..PENCPIRQLLSFFWKVILTVFGGRKDLAK.TKIWARKRMG....LP.EEMDHSTIVASPLDYNAFRQeiIAKfPAYEPPEPL..LRLDPDAT..........................................SLFPASLAIH...AEPEEVSPITAAVNAATNPHPNAQNPLLATPAPS...PPPSPRPSPKlprsiFQTPANMPFQYPAGLGLEESVpESVREASEIYASRT.RTALgvwQMWREKEEFERRERGWVY....DDDDTDEVesdnEEERRLRRIEEV
  489-  636 (89.44/46.13)	LATTNIDSSDDDTKSSpiLISLSSDSKHLSETDIDERRTREimAKTISATLLLLLKWFRVSHVF.......................................................................kfeylaqllvdsnsllllvkifandlstavaekteikeqnffRFCN....LHsaqPQPPERTQGTTA.GAALKKAAGAVGATSNWEMPD............................................................................................................
  838- 1052 (278.03/171.46)	...........................................................VRTVGGADTELDKiTGIQRHRRMSkntpLPtEEIDLSTIQWREPGWIAHPQ..FGR.GSLRPDNVLdyFKLSVFWS..........................................RGCNNDVVLQqqiGQPHQYAMGTPEFTNMLKQLRGLEYVLAYHNMPDvfiIRAQERHSPN.....HATPLHLYFCANGNIYLAPSL.HSILTSRTLNALRSvKEAL...TLTTSLANFDPAGAGYTYeftkEEGDSEKV....KEERREREMLEI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03928 with Med6 domain of Kingdom Fungi
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