<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03923

Description Uncharacterized protein
SequenceMMQGTIRIYAPVYRRPTLRPIAINMTDRITQLQTAVNDAVNQYHSALNYLHTQHQPSSLSGEGLIAEHLGETPAAPAQEVEKIGDAKRELARDMIVKHKQIDALIDSLPGVGVTEGEQYARLRLLEGELQRIDQEYAQLLGDKDVLQNKLDDLIPKQRAPSNPCFPCAQPLLKLLLGAELGGVTTSLLAAVGGTGRETGVALAADHLVAVVLGSQSLKRGLNDTTTETEDKVKGRLLLDVVVGESAAILELLSGEDETLLVRGNSLLVLDLGLDVVDGVRGLDLEGDGLTREGLDEDLHLYRGRRVSSVTSRQRRERTTYLCCGGESKLSGRPSDRSACQFAARGGRATRGGEGFCASSPGSHFGWCLCLCLAVLPVPVIVHTTITSSIHPQHTQHNETTSIHPQHNETTSIHPQHIQHNETNGSTHDEGSRLPGCASRHARLGHKLRIQRRCFPWIPPLVNADQPFQAYAPQLADRLRLTATQSNIIGAFGNYGVYFGGPFVGMLVDARGPRLPLLLAAGVLFSGYYGLYRAYTYNYETSVTTLALCMLLTGVGSSAGSAAAINSVVKNFPTTRGTATSIAISLFGLSAFAFSAAAAFLGDTSAFLLLLSTATGVSCLIGAYFVVIVPPMAIDYLTVSESRPSLHDRRRPILRQEPGKHTRTYSGSLDEDPAENIEDAEDSKSQIDMGGVSLLKSTEFWLFFTVVCFLSGAGLMLINNVGHCVQSLWSVNHPNASPGHVRQMQASHVGTISIFNCLGRISAGVTSDVARRKWGLQRCWFLCIAAGLFVVAQFAASIITHAQNLYVVSSMTGFAYGMMFGTAPVLLAEWFGVARFSQNWGWLCVGPGIAGSIFNLLYGRTYDSHVSGDQECRLGLECYQAAFQVTGTACCAALALAIALGIRVRNRN
Length907
PositionMiddle
OrganismSaitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Taphrinomycotina> Taphrinomycotina incertae sedis> Saitoella.
Aromaticity0.07
Grand average of hydropathy0.027
Instability index37.95
Isoelectric point6.84
Molecular weight97871.57
Publications
PubMed=21914972
PubMed=24646756

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transmembrane transporter activity	GO:0022857	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03923
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.94|      31|      33|     467|     497|       1
---------------------------------------------------------------------------
  442-  469 (43.12/22.04)	...RLGH....KLRIQRRCFPWIPPLVNADQPFQA
  470-  500 (53.22/28.82)	YAPQLAD....RLRLTATQSNIIGAFGNYGVYFGG
  502-  531 (30.61/13.66)	FVGMLVDargpRLPLLLAAGVLFS..GYYGLY...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.95|      25|      33|     168|     198|       2
---------------------------------------------------------------------------
  168-  198 (33.88/33.15)	AQPLLKLLLGAElggvttSLLAAVGGTGRET
  204-  228 (41.07/25.04)	ADHLVAVVLGSQ......SLKRGLNDTTTET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.24|      20|      22|     386|     405|       3
---------------------------------------------------------------------------
  386-  405 (42.05/31.52)	TSSIHPQHTQHNETT.SIHPQ
  409-  429 (37.19/27.02)	TTSIHPQHIQHNETNgSTHDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.92|      33|      33|     549|     581|       4
---------------------------------------------------------------------------
  549-  581 (54.23/30.79)	MLLTGVGSSA.GSAAAINSVVKNFPTTRGTATSI
  583-  616 (47.69/26.25)	ISLFGLSAFAfSAAAAFLGDTSAFLLLLSTATGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.59|      20|      26|     249|     273|       5
---------------------------------------------------------------------------
  235-  263 (23.31/20.98)	R..LLLDVVV....gesaaiLEllsGE.......DETL.LVRG
  264-  303 (12.28/ 9.76)	NslLVLDLGLdvvdgvrgldLE...GDgltreglDEDLhLYRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.86|      66|     648|      59|     131|       6
---------------------------------------------------------------------------
   59-  131 (87.34/86.28)	LSGEGL.IAEHLGETpAAPAQEVEKiGDAKRELARDMIVKHKQIDALIDSLPGV..GVTegEQYARLRLleGeLQR
  709-  777 (110.52/76.71)	LSGAGLmLINNVGHC.VQSLWSVNH.PNASPGHVRQMQASHVGTISIFNCLGRIsaGVT..SDVARRKW..G.LQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.32|      21|      24|     313|     333|       8
---------------------------------------------------------------------------
  313-  333 (39.12/22.57)	QRRERTTYLCCGGESKLSGRP
  340-  360 (38.20/21.86)	QFAARGGRATRGGEGFCASSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03923 with Med21 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HDRRRPILRQEPGKHTRTYSGSLDEDPAENIEDAED
2) ITSSIHPQHTQHNETTSIHPQHNETTSIHPQHIQHNETNGSTHDEGSRLPG
646
385
681
435










Molecular Recognition Features






MoRF SequenceStartStop




NANANA