<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03919
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MEFPAGAVTNFRMTEIYSTIHWKIYYIESHQLPSPGAGVLEDPSSALAIELESAILLIRDQGCLVDAIPGGNGLWVFSHNGEFDQLQPFSVLESDCSLTSLQIGAITFKQFHAEFTPLGYLIKRLMAEPQGTIFSPLSQQKFANTNEDCPINREIVTSSAFYKAFTSAIAGSLSLRATQLHGAIPLGKRALFTTSAPDEKLGQGINADPTLGPRSLLSTLNIEFSFKSLIISWRTIPQWGLQQLSTTAGADSISDVSLHEDIWLAPTGSLCRYIGADPGHSSGPQWDPSVGDYGEFEFPGGGNLLYLREWKRAVCVRLRMFGLGSVDPDTETWIEVEALNPFESRLGGTAGENRKSIAYKRFLWPARLCFKRSSEQCLALDKRAEYLDAATLDPLSLAEKWVTEMTTRTSPEDQMAVETHVAEGMQPEATGTTEKTSSSEIFASLARKIDFSDLSAGAVYPTPPGAVTGTGLVAAGSSDVLTLPGVSSLSHAHPQNTSRRSDVNISGAGCQSTSNSLPPVDITTTALEIGSGMYDTTADDDLFDELDGDFAPKQITEADFNFFDEPDFAAFPGSIDVSMGRVNTSLQNSHGAHDGDALDIAGTSHDAVERPAGSAEPEERKDSMRNREHRVVLVPPAVSSPKENVQADLPIESGNIISPTPVTPHQPLSPSIIRKILFSGNSGIPTTTSFDKHPTNRKARSGYEPLSFGEDLSLSDGKYELDGRFWFLPNAESDQMEMHPSDIPRVGIPEWRNEERRALPMEDSSRDRLKSGMQSSSDSSAESSEDDSEPETTPLDYSNRGLRVLSASRDNSQRFKDLDFTPSPLEPLTVNTEFSNTGMNANTLSFLRTLLFRAIDWTLDGYFTSTSGRFPVLLRRDDLIQVAQIVVDQVTQSSLSHVLERRTSIGLDQQNALPLSSTSKDSWYGKFSNFDIKRYTAIDVDTSIQGLRKDFRYLTVGSMSKLDPPHIRIHRGKGELEVLPPAIFFWEPFGFEPTQGQKDILAYCIYPESAEEGADAFLGRMGLLYSSANLGQHSRPQDSKGLIPWGLECTSIRDYTAIMNRLQTTCEHLGDVISCLPPGSENILVYIANPFPYEAAVVDICTAFLFLFRKYVSNFEKHTIRLNEVALQIIPLDFIASLTSLVVPSQQDYLHLAFEVYSRCPPKNRSSDLLGCAPPFTLAKPAPKIVPFKLTPDSGSPLAEKHSIHVAYSQSIDQRWVTAAWTDNLGRDQLTMTYCLRERGSTISRPASEIRADIWSVTRHIIGKSHAYWRVMVVKDEPLELDEAEAWVSMAQHHNQTKPTKIELTLLSVNPKPCLFFKLPPPPLQPSTLTGPTTSTPVSTPNPSMPSPDPSAAAPTPPPSSAEQAQTPIAQSLDPADSETILIDKTEETWSITLSHRVNISPSLANYHPALASGYLLRRRDGTSDTEGLASLCVNLIFTHSRIPSEMVLKDTLRVYRDLVTLARTKGIFHAQGDDVLPWHISTAVKGREFLGVVL |
Length | 1495 |
Position | Kinase |
Organism | Coccidioides immitis (strain RS) (Valley fever fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Onygenales> Onygenales incertae sedis> Coccidioides.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.289 |
Instability index | 45.76 |
Isoelectric point | 5.12 |
Molecular weight | 164274.85 |
Publications | PubMed=19717792
PubMed=20516208
|
Function
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP03919
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 542.88| 140| 142| 685| 826| 1
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484- 668 (169.42/107.90) .PGV..SSLSHaHPQNTSRRSdvnisgagcqstsnslppvditttALEIGSGMYDTTADDDLFdELD.......GDFAPKQITEADFNFFDEPDfaaFPgSID......VSMGRV....N..TSLQNSHGAHDGDALDIAGTSHDAVERPAGSAEPEERKDSMRNREHR.......VvlvppaVSSPKENVQ..ADLpiesgniisptPVTPhQPL
684- 825 (239.28/162.31) IPTT..TSFDK.HPTNRKARS........................GYEPLSFGEDLSLSDGKY.ELD.......GRFWFLPNAESDQMEMHPSD...IP.RVG......IPEWRN....EERRALPMEDSSRDRLKSGMQSSSDSSAESSEDDSEPETTPLDYSNRGLR.......V......LSASRDNSQrfKDL...........DFTP.SPL
826- 961 (134.18/83.04) EPLTvnTEFSN.TGMN..A............................NTLSFLRTLLFRAIDW.TLDgyftstsGRFPVLLR.RDDLIQVAQIV...VD.QVTqsslshVLERRTsiglDQQNALPLSSTSKDSW.YGKFSNFDIKRYTAID........VDTSIQGLRkdfryltV......GSMSK............................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.18| 14| 66| 196| 209| 2
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196- 209 (26.85/18.74) APDEKLGQGINADP
265- 278 (28.33/20.27) APTGSLCRYIGADP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 573.83| 187| 981| 233| 445| 3
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233- 445 (291.24/179.63) WRTiPQW....GLQQLSTT....AGADSISDVS..LHEDIWlaptgslcryigadpGHSSGpQWDPSVGDYGEFEFPGGGNLLYL...REWKRAVCVRLRMFglgSVDPDTETWIEVEAlNPFE.SRLGGTAGENRKSIAYKRFLWP.....ARLCFKRSSEQclALDKRAEYLDAATLDPL...SLAEKWVTEMTTRTSPEDQMA.VETHVAEGMqpeATGTTEKTSSSEIFASL
1216- 1432 (282.59/146.17) WVT.AAWtdnlGRDQLTMTyclrERGSTISRPAseIRADIW........svtrhiiGKSHA.YWRVMVVKDEPLELDEAEAWVSMaqhHNQTKPTKIELTLL...SVNPKPCLFFKLPP.PPLQpSTLTGPTTSTPVSTPNPSMPSPdpsaaAPTPPPSSAEQ..AQTPIAQSLDPADSETIlidKTEETWSITLSHRVNISPSLAnYHPALASGY...LLRRRDGTSDTEGLASL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.76| 18| 66| 98| 119| 4
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98- 116 (26.53/20.22) LTSLQI.GAITFKQfHAEFT
175- 193 (25.23/ 9.38) LRATQLhGAIPLGK.RALFT
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