<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03907

Description Uncharacterized protein
SequenceMAIQDKVENNDPTVTVGLAVSSSKSSKYAVQWAVKNFCTNGMVRFVLIHVLQRITTVPTPMGNYIPIDKVRADIASAYEKEVECKARTMLLFYKNMCDEKAKAEVLVVKGEDVAETISNVVSMYEIHKLVVGDSSQGNFIRKSKGTRTSSQICRSVPSFCAVYVVSKGGLSAVYSPGFEGHKSSELFLSSDSSKTEIHSDDKPSLSDATPSRSFRSNLTWENLESLSSADHDRPRSLHEYLTESTSASVGDNNSNSPCASGQTPRPSNVLISDKAPMTSSPLQELMLSEDMDDVNSELEKLRLELRHIKGVCKLVQDESINASQHVTDLAAKHAEEEARLSEVYSRINRVNEQAHQEKEQLNALKAQCRHVRDLARKEALQKQILQLRTSKEADKMQRLEKLLELDGMSYSTFTWEDIESATLSFSEALKIGSGSNGTVYKGNLRQTSVAIKVLTSDDSHRIKHFKQELEVLGKIRHPHLLLLIGACLDRPCLVYEYMENGSLEDRLQLKGGTAPLPWYQRLRIAWEIALALVYLHSSKPKPIIHRDLKPANILLDSNFTSKIGDVGLSTLLPLGDALSTTRTIFKDTDLVGTLFYMDPEYQRTGQVSTKSDTYALGMVLLQLLTGKPPVGLADLVEQAVENGHLVDILDKSAGKWPAQEAHELAQLGLSCLEMRSKHRPDLKCKVLVELERLKKIASAVSDPVRPVISGPPSHFICPILKRIMQDPCIASDGYSYDRVAIEMWLCENDMSPITKSRLPNKDLVPNHALLCAITSWKAEARD
Length782
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.316
Instability index40.15
Isoelectric point6.54
Molecular weight86917.37
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03907
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     261.25|      67|      79|     398|     464|       1
---------------------------------------------------------------------------
  187-  225 (29.57/11.78)	.......FLSSDSSKTEIH...........SDDKPSLSDA..TPSrsfrSNLTWE..NL.ES.........................
  398-  445 (66.30/35.27)	..............................RLEKLLELDG..MSY....STFTWE..DI.ESATLSFSEALKIGSGSNGTVYKGNLR
  446-  523 (92.98/52.33)	QTSVAIKVLTSDDSHRIKHfkqelevlgkiRHPHLLLLIGacLDR....PCLVYE..YM.ENGSL..EDRLQLKGGTAPLPWYQRLR
  527-  586 (72.40/39.17)	EIALALVYLHSSKPKPIIH...........R..DLKPANI..LLD....SNFTSKigDVgLSTLLPLGDAL....STTRTIFK....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.33|      41|     432|     271|     334|       3
---------------------------------------------------------------------------
  272-  334 (48.24/85.86)	SDKAPMTssplqelmlsedmdDVNSELEKLRlELRHikgvcklVQDESINA....SQHVTDLAAKHA
  335-  379 (64.09/42.30)	EEEARLS..............EVYSRINRVN.EQAH.......QEKEQLNAlkaqCRHVRDLARKEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03907 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HDRPRSLHEYLTESTSASVGDNNSNSPCASGQTPRPSNVLISDKAPMTSSPLQELMLSEDM
231
291










Molecular Recognition Features






MoRF SequenceStartStop




NANANA