<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03906

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRLEPSSFHGANYPANLRRQPLVAPYKLKLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRGFRRKLLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSATLNHSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGLLNLGYSTLLAESGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWVRKEQKQELFTVETIHQSIEQTSGGKATVVQKTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDADHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGRTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSGEELDGHVHKKLNGKAGVLPSMKEIVQRQTDEFLRNLRENNATAPKNPSFSETEDSYQTAHDIVLGLADCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILDIHINSLALLRETLGDRFSRIFEISLAVEASSAVAASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYDNANKSSKRKLEVTSIEEREVDGLIDSRKSSNRKSLNVGTSPEGHGSTQKYFTQEALAELVLPCIDRSSSEFRFVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSESLFDRLLCVLQALLGNSQPSWLKTKPSSKPAVKFLRDLSAIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSAAGPHQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2190
PositionKinase
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.196
Instability index47.57
Isoelectric point8.10
Molecular weight242501.28
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03906
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      15|    1137|    1150|       1
---------------------------------------------------------------------------
 1137- 1150 (19.67/16.44)	RQSTSVAfAYARYF
 1155- 1167 (25.33/15.45)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.83|      12|      21|    1786|    1797|       2
---------------------------------------------------------------------------
 1786- 1797 (21.85/14.61)	GYDNANKSSKRK
 1810- 1821 (20.99/13.69)	GLIDSRKSSNRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.72|      12|      15|     833|     844|       6
---------------------------------------------------------------------------
  833-  844 (19.82/13.42)	EETKKTKKGQTD
  850-  861 (21.90/15.70)	EDVGHAKTGCKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.20|      16|      19|    1257|    1272|       8
---------------------------------------------------------------------------
 1257- 1272 (28.96/17.35)	HDIVLGLADCIRQNGG
 1279- 1294 (25.25/14.22)	HSLVASAVSAIVDNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.64|      48|     624|      64|     118|       9
---------------------------------------------------------------------------
   64-  118 (76.67/66.82)	FYPQtlscaeeTLTKEYVQSG...YKDTVEGIE.EAREI.VLSQIPYLSKPDIATKCKEA
  691-  743 (72.96/48.70)	FYPQ.......TYVRQLIVSGitiWNDSLFDLEkKTRHYkILKHLPGFCLFNILEEAKIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.30|      31|     629|    1193|    1229|      10
---------------------------------------------------------------------------
 1193- 1229 (44.48/45.01)	GISsgEELDGHVHKKLNGKA...GVLPsmkeIVQRQTDEF
 1826- 1859 (51.82/33.64)	GTS..PEGHGSTQKYFTQEAlaeLVLP....CIDRSSSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.00|      32|     627|    1381|    1424|      13
---------------------------------------------------------------------------
 1343- 1376 (43.36/32.55)	SRIFEISlAVEASSAVAASFAPPKAHrSQQSSET
 1392- 1423 (50.63/22.54)	SKCFNVK.AVKVSAAVSALVVGAIIY.GVVSLER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.15|      17|      23|    1885|    1904|      17
---------------------------------------------------------------------------
 1885- 1904 (25.70/23.93)	GInklNSSNPSGNEGLSKPN
 1908- 1924 (32.45/20.72)	GI...FSGSPNIRKHSPVPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.03|      40|      40|    1676|    1715|      18
---------------------------------------------------------------------------
 1641- 1675 (53.57/30.50)	PERL...IEILNVLQPAKFHWQWVELRLLL......DE...QSLIEK
 1676- 1715 (62.47/36.82)	PKNVP.YVKALRSLSPNAENFTLSEREKGL......TEVILSRLLVR
 1716- 1757 (43.99/23.70)	PDAAPlYSELIHLLGKLQESFVM.....GIkwflqgQDVLLGNNSVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      15|     903|     913|      19
---------------------------------------------------------------------------
  903-  913 (18.77/12.97)	TVETIHQSIEQ
  920-  930 (18.18/12.31)	TVVQKTQNIAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03906 with Med12 domain of Kingdom Viridiplantae
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