<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03905

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRLEPSSFHGANYPANLRRQPLVAPYKLKLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRGFRRKLLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSATLNHSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWVRKEQKQELFTVETIHQSIEQTSGGKATVVQKTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDADHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGRTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSDCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILDIHINSLALLRETLGDRFSRIFEISLAVEASSAVAASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYDNANKSSKRKLEVTSIEEREVDGLIDSRKSSNRKSLNVGTSPEGHGSTQKYFTQEALAELVLPCIDRSSSEFRFVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSESLFDRLLCVLQALLGNSQPSWLKTKPSSKPAVKFLRDLSAIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSAAGPHQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2108
PositionKinase
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.182
Instability index47.92
Isoelectric point8.33
Molecular weight233540.40
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03905
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      16|    1123|    1138|       1
---------------------------------------------------------------------------
 1123- 1136 (19.67/16.67)	RQSTSVAfAYARYF
 1141- 1153 (25.33/ 9.42)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.83|      12|      21|    1704|    1715|       2
---------------------------------------------------------------------------
 1704- 1715 (21.85/16.14)	GYDNANKSSKRK
 1728- 1739 (20.99/15.12)	GLIDSRKSSNRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.83|      10|      31|    1189|    1199|       3
---------------------------------------------------------------------------
 1189- 1199 (16.51/12.22)	GGANPdGDHSL
 1223- 1232 (20.31/10.01)	GGNNP.GVTSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.64|      48|     624|      64|     118|       4
---------------------------------------------------------------------------
   64-  118 (76.67/74.37)	FYPQtlscaeeTLTKEYVQSG...YKDTVEGIE.EAREI.VLSQIPYLSKPDIATKCKEA
  691-  743 (72.96/54.15)	FYPQ.......TYVRQLIVSGitiWNDSLFDLEkKTRHYkILKHLPGFCLFNILEEAKIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.63|      27|      36|     776|     809|       5
---------------------------------------------------------------------------
  776-  803 (44.79/38.90)	VEGRVPLSSCLQKQPDlLMDSTDD.NHGR
  815-  842 (40.84/19.02)	ISGREETKKTKKGQTD.LVDSEEDvGHAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.59|      13|      15|    1356|    1370|       6
---------------------------------------------------------------------------
 1356- 1370 (14.30/17.68)	QFlRISkASTNGVTH
 1374- 1386 (22.29/13.82)	NF.KID.SSTEVLVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      15|     889|     899|       9
---------------------------------------------------------------------------
  889-  899 (18.77/14.87)	TVETIHQSIEQ
  906-  916 (18.18/14.13)	TVVQKTQNIAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.90|      40|      40|    1594|    1633|      11
---------------------------------------------------------------------------
 1566- 1598 (47.60/30.52)	....LNVLQPAKFHWQWVELRLLL......DE...QSLIEKPKNVP
 1599- 1638 (63.28/43.35)	YVKALRSLSPNAENFTLSEREKGL......TEVILSRLLVRPDAAP
 1640- 1675 (33.02/18.60)	YSELIHLLGKLQESFVM.....GIkwflqgQDVLLGNNSVR.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03905 with Med12 domain of Kingdom Viridiplantae
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