<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03904

Description Uncharacterized protein
SequenceMGSRGGDADAWETASARSGVSSSSSGRATAAAAAPAPENKVFVALPAQHKSGRSTLAWALRHVAELAPAAIGGGGEVVVVAAHVHSPAQMIPMSMGGKFHASKLRPEQVSTYRKYEREQVEKNLDEYLEQCTKMKVKCEKIVIENEDIANGITELILLHGVSKLVMGAAADKQYSRKMKLPKSKTALSVTVKANPSCKIWFVCKEHLIYTRDFVAPISPNSQSPDTIRGSISNLAARGGTTNQYANNAVNGYVQRSMSEMVVPASSRVSLQLHSRSSLQESLSRLNMEGTSVDSWDSFRRGSFPSSYRASSTVTEEVLSDSSSSGIPRDGISTLAGCDFPNSALHHEQGDAGSNANLFDKLEEAFAEAEKYRKQAYDESLRRQKTEEELISYHQKARKSEDLFLNEAKQRKEVEETLAKANVEIQLLKEEMDALKHNRDDLSSKLSDVSEQKVTLEQQAVEYGSIIIDLKDTVAASQALIDSMQMEFEQLKHERDNALKHAEELHREKQNMVSSSDLEWSTEFSLLELQQATQNFSDAMKIGEGGFGCVYRGQLRNTTVAIKMLRSQNLQGQSQFQQEVAVLSRVRHPNLVTLVGYCSEASGLVYEFLPNGSLEDHLACESNTSPLTWQIRTRIIGEICSALIFLHSDKPHAVIHGDLKPANILLDANLVSKLGDFGISRLLNRSSTVSTSFYQTTNPRGTFAYMDPEFLTTGELTARSDIYSFGIIILRLVTGKPALGIAREVEVALDKGELELLVDRSAGDWPFVQAEKLMLLGLQCAELSRRKRPDRMNHVWSVVEPLVKSASLPVEPESIGHWVNKNRTPFYFICPISQEVMRDPHIAADGFSYEEEAIKGWLGSGHNTSPMTKSTLEHLQLIPNLALRSAIEEFMQQKQQQIPS
Length899
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.377
Instability index48.28
Isoelectric point6.03
Molecular weight99421.22
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03904
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.92|      68|     244|     274|     341|       1
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  274-  341 (116.61/73.10)	SRSSLQES..LSRLNMEGTSVDSWDSFR..RGSFPSSYRA...SSTVTEEVLSDSSSSGIP..RDGISTLAGCDFPN
  513-  589 (97.31/59.79)	SSSDLEWSteFSLLELQQATQNFSDAMKigEGGFGCVYRGqlrNTTVAIKMLRSQNLQGQSqfQQEVAVLSRVRHPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.30|      21|     245|     402|     422|       3
---------------------------------------------------------------------------
  357-  385 (20.83/11.07)	LFdkLEEAfaeaeKYRKQAyDESLRRQKT
  402-  422 (34.47/23.06)	LF..LNEA.....KQRKEV.EETLAKANV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.15|      59|     563|     143|     225|       4
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  163-  225 (90.13/121.10)	KLVMGAAAdKQYSRKMKLPKSKTALSVTVkaNPSCKIW.FVCKEHLIYTRDFVAPISpNSQSPD
  730-  789 (94.01/63.80)	RLVTGKPA.LGIAREVEVALDKGELELLV..DRSAGDWpFVQAEKLMLLGLQCAELS.RRKRPD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03904 with Med32 domain of Kingdom Viridiplantae
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