<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03900

Description Uncharacterized protein
SequenceMTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPPPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGGGGGGGGGGQQASPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPTNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSSAGWPSILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAQTKQQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDVDFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMVGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length1301
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.208
Instability index51.24
Isoelectric point6.29
Molecular weight138572.64
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.58|      16|      17|      77|      92|       1
---------------------------------------------------------------------------
   48-   58 (20.93/ 6.15)	.EGQG....GGGGVGD
   73-   88 (34.25/14.46)	MEVDGGAGGGGGGVGD
   89-  101 (23.40/ 7.69)	VEGGGGGGGAGGG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.45|      17|      19|     870|     887|       2
---------------------------------------------------------------------------
    3-   19 (31.87/11.28)	SSSAPNPSPLVPTPTPS
  870-  886 (30.58/10.39)	SSGSGNSRNMVTSPTNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.78|      58|     115|     891|     949|       3
---------------------------------------------------------------------------
  418-  457 (29.94/11.40)	..................LQDYLvsEGAqtkqQAQVDNETTEVASIHCCPVSNFSAYV.......
  891-  949 (95.87/58.43)	STNQGNQGGVASTTGSSQMQEWV..QGA....IAKISNNTDGAANAAPNPISGRSSFMPiSINTG
 1007- 1059 (85.97/48.08)	SKTEDNTLAVRSGLGAAKLED.....GT....TSR..GQMVGAKGAEENPVGNKSARIG.SGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.26|      38|      45|     321|     365|       4
---------------------------------------------------------------------------
  271-  315 (59.88/39.85)	PANSSTSSNLktfeekfLTQQPQSSAGWPSILCVCSVFSSGSVQL
  328-  365 (65.38/33.84)	PRWFSTSKGL.......LGAGPSGIMAADAIITETGALHVAGVPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     113|     847|     859|       5
---------------------------------------------------------------------------
  847-  859 (26.05/18.89)	HFITRLRRYASFC
  964-  976 (26.85/19.70)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.85|      28|      45|     458|     485|       7
---------------------------------------------------------------------------
  458-  485 (48.74/23.37)	SPEA.AAQSATTTT.....WGSGVTSVAFDPTRG
  500-  532 (46.54/21.97)	SPYD.PDEGPSITGwrvqcWESSVQPVVLHPIFG
  533-  551 (21.57/ 6.12)	SPANfGGQPPTQTV.....WSTRV..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.26|      10|      17|     799|     808|       8
---------------------------------------------------------------------------
  799-  808 (18.30/10.08)	INPSTLLPEP
  819-  828 (18.96/10.73)	IGPDKMTVDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.95|      22|      30|     598|     627|       9
---------------------------------------------------------------------------
  598-  624 (31.10/38.43)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  631-  656 (32.85/15.00)	PN....FEQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03900 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EDGTTSRGQMVGAKGAEENPVGNKSARIGSGNA
2) MTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPPPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGGGGGGGGGGQQASPATVFRIRLKQPP
3) SSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGS
1026
1
870
1058
125
906










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLK
116
122