<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03899

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREIAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQDRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.800
Instability index60.71
Isoelectric point8.02
Molecular weight116764.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03899
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     569.01|      68|      68|     273|     340|       1
---------------------------------------------------------------------------
   14-   63 (60.25/16.08)	.......................PEAAEVP....S.........AAP.ASESEGPFDSGVVAAATT....P..A.....V................VDSAVEGDAPA..AP.....AP....TS.G
   64-  131 (83.73/24.95)	SG............PAapsmpanP.ASPAT..............PGP.PRPQFAGSPAYA..SPPA....P..AfsynvL......P.....RPS.PRPQVGSGAAQ..QQ...LASP....PA.M
  141-  194 (78.10/22.82)	LQ...........PPV.......P......................G.QYFGNRPSFSYNVVSHAN....A..G.....L......PT....GQQ.FQLDTGTNHAV..QVSRFV..P....PS.S
  195-  256 (76.93/22.38)	LQ...........PP...........AP..MNL.A...........R.PSSAFPGAGA....MPPN....PpgS.....IrlpfpgPP....RPS.INTFVASPQQA..QPQA..SQL....PS.N
  257-  335 (113.75/36.29)	SGssdvstsrsdtRSV.......PEASPQTMQL.S.........TGP.PSTSTAGSPSITVQMPTN....P..S.....L......PT....RPE.VFGAVGASVPG..QPSTILSAP....PS.L
  336-  402 (61.04/16.38)	LG...........RPM......tPSASP...................fPQTSQ..SPT.AFQQPGQqqlyP..S.....Y......PSahgvQPQpLWGY.....PP..QPTGFQQPPfqsyPSgL
  406-  457 (55.24/14.19)	LG...........RPM.......VGSSSVTAYLpS.........IQP.PGVSTTDRDS........................................KELSSANPGseQPTQQGSQN....SD..
  458-  512 (39.97/ 8.42)	..............QL.......EDKRTTAIQD.SdswsahkteAGV.VYYYNALTGESTYQKP......P..G.....Y......KG....EPE........KVAA..QP...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.56|      48|      48|     560|     607|       2
---------------------------------------------------------------------------
  560-  607 (77.46/37.38)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (56.58/25.50)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (59.52/27.17)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     215.72|      43|      43|     857|     899|       3
---------------------------------------------------------------------------
  725-  771 (34.53/23.02)	........................RFKAI.PsHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  772-  844 (31.91/20.59)	ASE..dinsnkdykefkrkwgtdpRFEAL.D.RKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  845-  894 (63.95/50.35)	WTKVK............enfrsdaRYKAM.K.HEEREIAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  895-  938 (49.14/36.59)	QAKLK..................eREREMrK.RKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
 1018- 1057 (36.20/24.58)	WTEAK............gllrsdpRYNKL.A.SKDRESIWRR...............YA...DDMKTKLKQS...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      20|     115|     942|     961|       4
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  942-  961 (38.37/20.97)	DPK.ASWTESKPRLEKDPQDR
 1058- 1078 (33.20/17.03)	DMKeKSDTDGKQRRSSDPPRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03899 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
3) AGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
4) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAA
5) ELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAP
6) MATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
7) MKTKLKQSDMKEKSDTDGKQRRSSDPPRRR
8) SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
884
625
166
99
555
1
1050
413
920
698
411
138
609
95
1079
473










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQD
2) DGKKYYYDNKLK
3) PKIVFDPRFKAI
4) SIWRRYADDMKTKLKQSDMKE
5) VAAATTPAVVDS
6) VVYYYNALT
614
532
718
1041
37
482
624
543
729
1061
48
490