<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03899

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREIAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQDRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.800
Instability index60.71
Isoelectric point8.02
Molecular weight116764.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03899
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     569.01|      68|      68|     273|     340|       1
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   14-   63 (60.25/16.08)	.......................PEAAEVP....S.........AAP.ASESEGPFDSGVVAAATT....P..A.....V................VDSAVEGDAPA..AP.....AP....TS.G
   64-  131 (83.73/24.95)	SG............PAapsmpanP.ASPAT..............PGP.PRPQFAGSPAYA..SPPA....P..AfsynvL......P.....RPS.PRPQVGSGAAQ..QQ...LASP....PA.M
  141-  194 (78.10/22.82)	LQ...........PPV.......P......................G.QYFGNRPSFSYNVVSHAN....A..G.....L......PT....GQQ.FQLDTGTNHAV..QVSRFV..P....PS.S
  195-  256 (76.93/22.38)	LQ...........PP...........AP..MNL.A...........R.PSSAFPGAGA....MPPN....PpgS.....IrlpfpgPP....RPS.INTFVASPQQA..QPQA..SQL....PS.N
  257-  335 (113.75/36.29)	SGssdvstsrsdtRSV.......PEASPQTMQL.S.........TGP.PSTSTAGSPSITVQMPTN....P..S.....L......PT....RPE.VFGAVGASVPG..QPSTILSAP....PS.L
  336-  402 (61.04/16.38)	LG...........RPM......tPSASP...................fPQTSQ..SPT.AFQQPGQqqlyP..S.....Y......PSahgvQPQpLWGY.....PP..QPTGFQQPPfqsyPSgL
  406-  457 (55.24/14.19)	LG...........RPM.......VGSSSVTAYLpS.........IQP.PGVSTTDRDS........................................KELSSANPGseQPTQQGSQN....SD..
  458-  512 (39.97/ 8.42)	..............QL.......EDKRTTAIQD.SdswsahkteAGV.VYYYNALTGESTYQKP......P..G.....Y......KG....EPE........KVAA..QP...............
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.56|      48|      48|     560|     607|       2
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  560-  607 (77.46/37.38)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (56.58/25.50)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (59.52/27.17)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     215.72|      43|      43|     857|     899|       3
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  725-  771 (34.53/23.02)	........................RFKAI.PsHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  772-  844 (31.91/20.59)	ASE..dinsnkdykefkrkwgtdpRFEAL.D.RKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  845-  894 (63.95/50.35)	WTKVK............enfrsdaRYKAM.K.HEEREIAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  895-  938 (49.14/36.59)	QAKLK..................eREREMrK.RKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
 1018- 1057 (36.20/24.58)	WTEAK............gllrsdpRYNKL.A.SKDRESIWRR...............YA...DDMKTKLKQS...............
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      20|     115|     942|     961|       4
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  942-  961 (38.37/20.97)	DPK.ASWTESKPRLEKDPQDR
 1058- 1078 (33.20/17.03)	DMKeKSDTDGKQRRSSDPPRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03899 with Med35 domain of Kingdom Viridiplantae
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