<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03898

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREIAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQDRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRRSSDPPRRR
Length1048
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.815
Instability index60.29
Isoelectric point6.84
Molecular weight113503.78
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03898
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     376.97|      52|      53|      55|     106|       1
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    5-   50 (43.76/10.05)	...ATAASDATNPE......AAEVPsAA....PAS.ES.....E......G.PFD.......SGVV...A.AATTPAVVDS.AV
   55-  106 (103.69/34.05)	P.AAPAPTSGSGPA......APSMP.AN....PASPAT.....P......G.PPRP.Q...FAGSP...A.YASPPAPAFSYNV
  110-  160 (55.68/14.83)	P..SPRPQVGSGAAqqqlasPPAMM.AP....SVAAAA.....L......Q.PPVPgQ...YFGN...........RPSFSYNV
  200-  257 (73.04/21.78)	P.MNLARPSSAFPG......AGAMP.PN....P..PGSirlpfP......G.PPRP.SintFVASP...Q.QAQPQASQLPSNS
  296-  340 (36.88/ 7.30)	............SI......TVQMP.TN....PSLPTR.....PevfgavG.ASVP.......GQP...StILSAPPSLLGRPM
  342-  402 (63.92/18.12)	PsASPFPQTSQSPT......AFQQP.GQqqlyPSYPSA.....H......GvQPQP.L...WGYPPqptG.FQQPPFQSYPSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     215.72|      43|      43|     826|     868|       2
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  694-  740 (34.53/16.33)	........................RFKAI.PsHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  741-  813 (31.91/14.59)	ASE..dinsnkdykefkrkwgtdpRFEAL.D.RKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  814-  863 (63.95/35.88)	WTKVK............enfrsdaRYKAM.K.HEEREIAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  864-  907 (49.14/26.04)	QAKLK..................eREREMrK.RKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
  987- 1026 (36.20/17.44)	WTEAK............gllrsdpRYNKL.A.SKDRESIWRR...............YA...DDMKTKLKQS...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.46|      16|      70|     424|     443|       3
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  262-  277 (26.96/ 6.23)	VSTSRSDTRSVPEASP
  428-  443 (26.50/15.65)	VSTTDRDSKELSSANP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     228.17|      50|     171|     470|     519|       4
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  462-  518 (83.65/32.01)	K...rttaiqdSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVA.....AQPVPVS.WD
  519-  564 (45.51/14.73)	K.......lagTD.WSIVTTSDGKKYYYDNKLKVSSWQLPP......E.VAeliknAESGP.....
  591-  632 (49.96/16.75)	..................PADAGASSVPSPLATPSSASELNGSKTTDAAPM.....GHQVSIS.GE
  633-  683 (49.04/16.33)	KskdnsgdgnmSDSSSNSDDEE.........HGPSEEECTRQFKVEMLK.E.....RGVLPFSkWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      20|     116|     911|     930|       5
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  911-  930 (38.37/18.45)	DPK.ASWTESKPRLEKDPQDR
 1027- 1047 (33.20/14.99)	DMKeKSDTDGKQRRSSDPPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.43|      11|     227|     186|     198|       8
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  186-  198 (17.31/11.68)	VSRFVPpsSLQPP
  416-  426 (22.12/ 8.59)	VTAYLP..SIQPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03898 with Med35 domain of Kingdom Viridiplantae
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