<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03898

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREIAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQDRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRRSSDPPRRR
Length1048
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.815
Instability index60.29
Isoelectric point6.84
Molecular weight113503.78
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03898
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     376.97|      52|      53|      55|     106|       1
---------------------------------------------------------------------------
    5-   50 (43.76/10.05)	...ATAASDATNPE......AAEVPsAA....PAS.ES.....E......G.PFD.......SGVV...A.AATTPAVVDS.AV
   55-  106 (103.69/34.05)	P.AAPAPTSGSGPA......APSMP.AN....PASPAT.....P......G.PPRP.Q...FAGSP...A.YASPPAPAFSYNV
  110-  160 (55.68/14.83)	P..SPRPQVGSGAAqqqlasPPAMM.AP....SVAAAA.....L......Q.PPVPgQ...YFGN...........RPSFSYNV
  200-  257 (73.04/21.78)	P.MNLARPSSAFPG......AGAMP.PN....P..PGSirlpfP......G.PPRP.SintFVASP...Q.QAQPQASQLPSNS
  296-  340 (36.88/ 7.30)	............SI......TVQMP.TN....PSLPTR.....PevfgavG.ASVP.......GQP...StILSAPPSLLGRPM
  342-  402 (63.92/18.12)	PsASPFPQTSQSPT......AFQQP.GQqqlyPSYPSA.....H......GvQPQP.L...WGYPPqptG.FQQPPFQSYPSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     215.72|      43|      43|     826|     868|       2
---------------------------------------------------------------------------
  694-  740 (34.53/16.33)	........................RFKAI.PsHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  741-  813 (31.91/14.59)	ASE..dinsnkdykefkrkwgtdpRFEAL.D.RKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  814-  863 (63.95/35.88)	WTKVK............enfrsdaRYKAM.K.HEEREIAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  864-  907 (49.14/26.04)	QAKLK..................eREREMrK.RKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
  987- 1026 (36.20/17.44)	WTEAK............gllrsdpRYNKL.A.SKDRESIWRR...............YA...DDMKTKLKQS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.46|      16|      70|     424|     443|       3
---------------------------------------------------------------------------
  262-  277 (26.96/ 6.23)	VSTSRSDTRSVPEASP
  428-  443 (26.50/15.65)	VSTTDRDSKELSSANP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     228.17|      50|     171|     470|     519|       4
---------------------------------------------------------------------------
  462-  518 (83.65/32.01)	K...rttaiqdSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVA.....AQPVPVS.WD
  519-  564 (45.51/14.73)	K.......lagTD.WSIVTTSDGKKYYYDNKLKVSSWQLPP......E.VAeliknAESGP.....
  591-  632 (49.96/16.75)	..................PADAGASSVPSPLATPSSASELNGSKTTDAAPM.....GHQVSIS.GE
  633-  683 (49.04/16.33)	KskdnsgdgnmSDSSSNSDDEE.........HGPSEEECTRQFKVEMLK.E.....RGVLPFSkWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      20|     116|     911|     930|       5
---------------------------------------------------------------------------
  911-  930 (38.37/18.45)	DPK.ASWTESKPRLEKDPQDR
 1027- 1047 (33.20/14.99)	DMKeKSDTDGKQRRSSDPPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.43|      11|     227|     186|     198|       8
---------------------------------------------------------------------------
  186-  198 (17.31/11.68)	VSRFVPpsSLQPP
  416-  426 (22.12/ 8.59)	VTAYLP..SIQPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03898 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
3) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAA
4) LPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
5) MATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
6) MKTKLKQSDMKEKSDTDGKQRRSSDPPRRR
7) SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
853
166
99
549
1
1019
413
889
411
138
667
95
1048
473










Molecular Recognition Features






MoRF SequenceStartStop




1) DGKKYYYDNKLK
2) LPKIVFDPRFKAI
3) SIWRRYADDMKTKLKQSDMKE
4) VAAATTPAVVDS
5) VVYYYNALT
532
686
1010
37
482
543
698
1030
48
490