<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03888

Description Uncharacterized protein
SequenceMAGGPPPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTEQYEKMKNFKLMLERTMHVLQLNKGNIQPALRDKIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQMKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1310
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.770
Instability index73.30
Isoelectric point9.33
Molecular weight143753.43
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03888
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    1150.85|     175|     177|     169|     343|       1
---------------------------------------------------------------------------
   10-  179 (172.28/33.85)	SGGI......D.PNAPAPAL............AGgdwRSQLQSEARNR....IV...N.KIM.dtLKKHL.PV....S..VPEGLNE.LQKiavrfeekiyTAATSQSDYLRK.IS................LKMLSM...ETKTQ.....Q.NP........GNAQviQN..QNPPG.SVPG.......LPQgsN..PT................QSSAIPLMSQQ.....QAR..Q.PNsTSVQSS.........LTNLGQN....LPGvnqtstlQ.NMSGMPQNTM
  180-  343 (295.67/64.46)	NNGLAQGASQD.IYATQRQM............AG...RQQQQQQSQNQ....LIYQQQ.QIM...MKQKLQQN....S..LMQQQSL.LQP..........TQMQSSQQPMMQ.IP................SSLQPG...QSIPQ.....T.QPMVQSSS.QGGIQ..QNALNSVPQ.SVQS.......LLQ..Q..PTQ.SAMRQQ.....QHSQSSMHPQPSLQ.....QAQPTQQPN.IPLQHQ.........LMGQQQN....LQQ...................
  344-  457 (142.47/26.46)	..............................................NQ....LIGQQNgAVD...MPQ..QQR....L..PVQSNNL.L.............NMQQTQQMLNQ............................QSMPS.....H.Q...............QQQLGS..Q.ANIS.......TLQ..Q..QQQ.QN.QQQ.....QQLLGTVPNVPNIQrmhmlQTKAVQQP.....QQ..............QQH....AQQ.......S.SLGLMQPQSQ
  458-  606 (182.57/36.40)	HNQLQQ..SQ......QHLM............SQ...FQAQPNQLQQQ....LGMPQQ.P.P...MQQRLQTS....AgmLLQQNNI.DQQ..........KQFMQAQRGLQE.VS................SS.......TSVDS.....TaQTGHTGTG.TGDWQ..EEAY....Q.MVKN.......LKD..QyfPEL.NDLYNKislklQHVDNMVPPQ...........KPTEQYE...................................kmK.NFKLMLERTM
  612-  790 (179.28/35.59)	NKGNIQPALRDkIPAYERQIisilnsqkrprvQG...QQTQFQQSAGQgptsNIPQQQ.Q.....PSQGLQQHdnhtN..QMPQASMpSMS..........TGLQSSGAAGIQhLP................ASPATN...FGVPA.....T.Q...............QNVTNA.PQ.ATSN.......L....E..VTQgSNFNSL.....QH..GSM..SGALQ.....QGSTG......PMQGT.........LNAQQQAsssmLSH....nsvG.TMQANA.NSM
  791-  989 (178.58/35.41)	Q.............ANANSL..................QQLKQQQQEH....HMMQNQ.Q.MkrqMFQQFQQK....Q..MLQQQ.L.PAQ..........QQLQKQQQSQMQ.VPqhhsgndanelkvrqgAAMKPGiyqQHLAQrnnfyN.QQMKQGSAfPISSP..QNLQASSPQiSHHSpqvdqhnLL......PSQvKTGTPL.....QSANSPYMPSPS..........PPVAPSpIPVDSEkplsnlsssLTNTGQA....THQ.......QtNMAPQSQSIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.79|      46|     202|     995|    1043|       2
---------------------------------------------------------------------------
  995- 1043 (66.51/51.11)	ISASPLLAE.FTSVDGNQAnMPTQVLTKSSAAE.RPLdrLLKALRTTQRQS
 1199- 1246 (70.28/42.93)	VAVSPSLKSmFASAQMSPI.LPLRVLVPASYPKcSPV..LLDKFPDEQRNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03888 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAGGPPPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKI
2) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
3) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQMKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTP
4) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
5) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
1
999
630
223
85
43
1038
993
550
218










Molecular Recognition Features






MoRF SequenceStartStop




NANANA