<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03878

Description Uncharacterized protein
SequenceMDELGIIEQGVDWRTRLGQDIRDCMINDILFSLQTKLQSTTTALIDLQKVAVRIEERIHTIASDYGDYLRRICLTRGDLDSYDVFLNDCQRQQASIRSSILLHQENKQGDQIVQAKRNIKGTSSSSVLSNQVALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLNIYWFHMDREKFSSFLDKLLLSRVQADAPMDTFELKSFAIDRANYWINHAIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATIFNQLANACPALQNMLLTDCLLEVEEISSSSLKNLDIIDCYILKDLSICTPSLVSLCIKNERTDNSSFRNSYLIFATAIIIDASNVSSMELLAMDRQFTFVEKDGGEPMFKNLRNLSLGLWCINNMFSPLRRFVRHSPMLRMVTLRISPLDWKSHLTKEHQEMLISIRNLFDGMQQGAAGQAGPSGGGGGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDESADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNSLEGQIQSTSLKRLSIINCLISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLEDCDSNDMLENLIKVARGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLRKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGEEDGGGDSSAKRKAQGEVARLAVKQRRARNSNLFDGMHQGAARQAGQSGGGGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASVPRVDIRHPCACDERADQERFGDFVTTMLLNRRPFAPIKALRLWWSHDGDAETWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISPKIKILKLTTFGMDIKAITHICSRCTSLEELELKDFRRLDGQIRSASLKQLSIINCFISVAFLVDAPNLISLCFIRPLSFERTKESICSSDNRRWPSPVWKDDNDGFDHGDIFAIASGEHFDDKRENESDQDYGFDDGSDDNIASESDHDDDGPPSPYSVSYDGDNECESYEPGNKEESDRTVAYGEIADEYSSNGDPGDEYRGNYVNHDSANYGRANKFGNLNFPVKSIVDASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNVKRLYLHLDVIHRRRRCIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAPFLQDNGVSPEKIFVRRTSSPHNGKEGRGSNSSAKRKAQGEVARLAVKQRRARNSELFDGMHQGAAGPGPSGGGGDRLSALPDAVLFRIVSHLKAREAVRTSGLSRRWRHVWASAPRVDVRYPCACDGRAVDQKSFRDFVTILLLRRRPLAPFKALRLSWSHDEDDVSAWIAHAVRRGAEEIDLSARRHHGYPVPDYKHFISPKIKILKLTHLGTTRFTADNTLDLLCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHVTSDGFLVEAPNLISLCCIRPARAVPWFSHMVSLVEATVVLDDSRLSDDYQQPVLEDDNDGSDYDDNFFAPKAEGPDDKRDNEADNDSGDKRNRDGSKSDLDDHDGEYDHEDGSESGDKEVDDLEGGDDRTVTYGEIADESSSYGIPIPSDEYGGNYGNHDYTIFGGDHMLDHLSDVRTLGLLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMDIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFVRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQLRRARNSNPFDGMQQGAAGQAPRRDDGEAAGPSGGGGGGGEDRLSALPDAVLGRIVSHLKAWQAVRTSVLSKRWRDVWASAPRVDIRHPCACNERADQERFHGFVDTLLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIELSTRHHQGSLEPEPEFTSFISPKIKILKLMRVGMDIRSITQICSRCTSLEELELEDVRLLEGQIQSASLKRLSIIKCYIDDGFLVDAPNLVSLCFIRPLGIERKGGSNSSSDRLWWPVWLNDDDGYDHDDDFFANASAVQSDDKRGSKSDQDDLEGCNDDDCTVAYDEIADEYSSNGGPGDEHGGYSESDDSTICGPYGLFNVLVKTSLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYIHLDMVHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRIFVRRTSRTRRDSRAKQKEQEDHLRLAKKW
Length2542
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.517
Instability index46.95
Isoelectric point5.67
Molecular weight285437.97
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03878
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    4187.92|     510|     510|     456|     965|       1
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  147-  453 (411.20/209.70)	..................................DMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLN...IYWFHM.DREKFSSFLDKLLLSRvQADAPMDTFELkSFAID.RA.NYWINHAIKHNAKVLKF.AEYGKWEPfylDPNLVELS..SRYLETLELTNVALD.ATIFNQ.....LANACPALQNMLLTDC.LLEvEEISSSSLKNLDIIDCYI.LKDLSICTPSLVSLCI......KNERTDNSS..........FRNS.YLIFaTAIIIDASNVSSmellAMDRQFtFVEKDGGE..............................................................................................................................................................................PMFKNLRNLSLGLWCINNMFSPLRRFVRHSPMLRMVTLRI...........................................................SPL.....D......WKSHLTKEHQEMLIS
  456-  965 (1091.84/570.68)	NLFDGMQQGAAGQAGPSGGG...GGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDESA.DQERFHGFVTTMLLRR.RPFAPIKALRL.CWSHDGDA.NNWIAHAVRRGAEEIDFSARHHQDDP...KPELEYTSFISHKIKILKLTRVRMG.IKFITQ.....ICYRCTFLEELELKNVNSLE.GQIQSTSLKRLSIINCLI.SDGFLVDAPNLISLCFFRPLSGKSTEGANHS..........SDNR.SWPF.SASVWEFDDDGS....DHDDDF.FAIASGGEHFDDKRDNESDQDN..GSSDED........SDDKRDQES......DHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDD........LEDCDSN.DMLENLIKVAR...................G............................LTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDM.IHRGRGDIDPSGGSFACNNLRKVKITCCKDDEMVHMLKQFLQRNGISLEKI.VHHTSSTHNGEEDGGGDSSAKRKAQGEVARLAVK
  973- 1503 (1008.49/526.47)	NLFDGMHQGAARQAGQS.......GGGGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASVPRVDIRHPCACDERA.DQERFGDFVTTMLLNR.RPFAPIKALRL.WWSHDGDA.ETWIAHAVRRGAEEIDFSARHHQDDP...KPELEYTSFISPKIKILKLTTFGMD.IKAITH.....ICSRCTSLEELELKDFRRLD.GQIRSASLKQLSIINCFI.SVAFLVDAPNLISLCFIRPLSFERTKESICS..........SDNR.RWP...SPVWKDDNDGF....DHGD.I.FAIASG.EHFDDKRENESDQDY..G.FDDG........SDDNIASES......DHDDDGPPSPYSVSYD....GDNECESYEPGNKEESDrtvaygeiADEYSSNgDPGDEY....R...................GnyvnhdsanygrankfgnlnfpvksivdASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNVKRLYLHLDV.IHRRRRCIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAPFLQDNGVSPEKIfVRRTSSPHNGKEGRGSNSSAKRKAQGEVARLAVK
 1511- 1857 (538.18/277.04)	ELFDGMHQGAAG.PGPS............GGGG.DRLSALPDAVLFRIVSHLKAREAVRTSGLSRRWRHVWASAPRVDVRYPCACDGRAvDQKSFRDFVTILLLRR.RPLAPFKALRL.SWSHDEDDvSAWIAHAVRRGAEEIDLSARRHHGYP...VP..DYKHFISPKIKILKLT..HLGtTRFTADntldlLCSGCTSLEELELKDIKSLW.GGIQSDSLKRLSIINCHVtSDGFLVEAPNLISLCCIRP..ARAVPWFSHMvslveatvvlDDSRlSDDY.QQPVLEDDNDGS....DYDDNF.FAPKAEGP..DDKRDNEADNDS..G...............DKRNRDGsksdldDHD.....GEY....DHEDGS.......ESGDKEVDD........LEGGD...DRTVTYGEIAD..................................................................................................................................................................................................
 1868- 2045 (183.91/89.15)	..........................................................................................................................................................................................................................................................................................................................................................SDEYGGNYG......NHD.............................................................ytifggdhmldhlsdvrtlG............................LLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMdIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIfVRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVK
 2054- 2541 (954.29/497.73)	NPFDGMQQGAAGQAPRRDDGeaaGPSGGGGGGGEDRLSALPDAVLGRIVSHLKAWQAVRTSVLSKRWRDVWASAPRVDIRHPCACNERA.DQERFHGFVDTLLLRR.RPFAPIKALRL.CWSHDGDA.NNWIAHAVRRGAEEIELSTRHHQGSL...EPEPEFTSFISPKIKILKLMRVGMD.IRSITQ.....ICSRCTSLEELELEDVRLLE.GQIQSASLKRLSIIKCYI.DDGFLVDAPNLVSLCFIRPLGIERKGGSNSS..........SDRL.WWP.....VWLNDDDGY....DHDDDF.FANASAVQS.DDKRGSKSDQDDleGCNDDDctvaydeiADEYSSNGG......PGDE...HGGYSESDDS.....TICGPY.........................GLFNVLVKTSL...................I............................MIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYIHLDM.VHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRIfVRRTSRTRR.......DSRAKQKEQEDHLRLAKK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03878 with Med15 domain of Kingdom Viridiplantae
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