<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03876

Description Uncharacterized protein
SequenceMVPAGGGGGELERRVMAALKASEARGDQPLVWAVEVARVVAGEGAGLPSADLAGILVSNLCFAHNSPSLWKLVGHAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLRSNVTSSFLSMEAGPNRDKITKSINDALQLSKIYGFSGIDNGHVIIFFMMFVITKLIDCTLEDCGFPSGLTEEQGSIYAIEGPQDMDLDVKGVSTEKQNEHRAQLRRKNTVMALDVLIMMVADRKIQSFLRLIFLNMVSNTAYQPNNKRLLGVLGNMKYGGSMLGQFTGAGRAACWVIFDIYVENAIDGKHLSAISAIEVLKEMTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDSRLCMLLALIPLSIGAILKEETDVHGAQGSKSLPKTSGLVSSLQDLIQYSGLLVPPSSVVNAANAAASKAAAFKANYKSGGGNPGMMGQNDSSTKTVGNMLHLIVEACISRNLIDTSSYLWPGYVVSSGHLKDATLPQESPWLNFMQGAPLSGPLIDALIATPASSTTELDRLYHIALNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQGSMSHYLAQMSTLNALLLGISYGDAIHIISLYGMVPDVAAALMPICEVFGSIPPPSNHKPAIIGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNHIDFANSSASSRNSSNNIGPLNEVPAQPLYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKPVVSSGNLSSTSSSSVSGSSVSTPDDYQRPTVPAWEFLEAVPFVLEAVLTACAHGRFSSRDLTTSLRDLVDFLPASIAAIVSYFLAEITRGIWKMVPMNGTEWPSPGASLHSIEAEIKEILASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKSSEYIHAISGQALENCAGGSSWPSMPIIAALWTQKVRRWHDFIILSCLRSPFGRDKDAVAQLIQSCFSSFLRSSCSGSDFTANRGVGALMGDAITGQGLQLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWADKLANGFSSSGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVLYEETLPTLLLSAREESMKDPGPVSSTLQGYAMANMLFFCGSLLWGAERTSPVMKLSFLSRRPRVVGNHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIASGLRSWNEHDLALALLERGGPQAISTGSIVNPKSYRGLARQRIQLELSDLSMYISTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVSPLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWSNLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIATSLTLRNPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCVIHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESFMAAQKYCLLATCHRKFLLQYFGEDRTTDCGNCENCTRTKNERDLSKESFLLLSCIKSCGGRWGLNLPIDVLRGSRVKKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHGTIISEYRFVNAVLLINGYNYLKETVHDTFRSISVSPNGYKFLSTADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSESEKISEDELKIYQVLLNVRMQLSQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVNQHFISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWELWQKMKFSFQKVAIHLHYRRAVPIKEKTVISYILDAARDGCEMDWSRFCEEVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAPKTTSNGSEVGADVCDASPLTKRGQTDGSLICGDEPASKLQKIDGQGVNSTAAIGATEDAILELVEGRNGVSLEDVVKHFNGSKRECVVEMLDNLEGNFLVYKKNGCYMIM
Length2149
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.006
Instability index43.72
Isoelectric point8.00
Molecular weight235104.47
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.34|      16|      16|    2042|    2057|       1
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 2042- 2057 (28.59/17.29)	TSNGSEVGADVCDASP
 2059- 2074 (29.76/18.34)	TKRGQTDGSLICGDEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.65|      16|      18|    1573|    1589|       2
---------------------------------------------------------------------------
 1573- 1589 (29.66/21.69)	RCvIHYGCPKSLESYYQ
 1593- 1608 (34.99/21.21)	RC.GRDGLPSVCWLYYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     248.80|      80|     199|     548|     636|       3
---------------------------------------------------------------------------
  548-  636 (131.39/83.44)	AKILCGasfVCGWN....IQEYVVRMVVKLLSPPLPS..NSSTQGSMSHYLAQMSTLNalllgiSYG.DAIHIISLYGMVPDVAAALMPICE..VFGS
  750-  838 (117.41/60.05)	ASTLSG...LCNKNpvhqVANKILSMICRKMNKPVVSsgNLSSTSSSSVSGSSVSTPD......DYQrPTVPAWEFLEAVPFVLEAVLTACAhgRFSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.30|      15|      17|     974|     989|       4
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  974-  989 (26.91/20.27)	RRWHDF..IILSCLrSPF
  991- 1007 (22.39/11.33)	RDKDAVaqLIQSCF.SSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.37|      13|      17|    1229|    1241|       5
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 1229- 1241 (22.85/16.78)	SW.LRDIKLDTLKK
 1248- 1261 (18.52/11.88)	SWnEHDLALALLER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.10|      31|     199|    1803|    1834|       6
---------------------------------------------------------------------------
 1803- 1834 (51.67/37.58)	QLTAEMIE....LEGHGGSQcKEEGLNPL.G....PSESEK
 2001- 2040 (40.43/23.05)	EVTYEMIQtflaIEGLGLSD.QVFGTVPTdGiqskTSEAPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.37|      16|      20|    1747|    1765|       9
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 1748- 1765 (23.17/22.14)	TIISEYRFVNavLLINGY
 1771- 1786 (29.20/14.52)	TVHDTFRSIS..VSPNGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.00|      17|     462|    1428|    1444|      10
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 1428- 1444 (34.95/23.25)	HCISEWGHDFRTEYKQL
 1893- 1909 (32.05/20.65)	HFISHYGSIFIQNITQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.00|      43|     462|     888|     933|      11
---------------------------------------------------------------------------
  846-  903 (17.47/11.33)	.........RD.LVDFLPASIAAIVS.....yflaeitrgiwkmvpmngtewpspgaSL..HSIEAeikEILAS..A
  904-  933 (45.08/22.75)	GIQIPSCYPRG.VPPMLPLPMAALVSLTITF..............................................
 1332- 1380 (40.29/20.25)	GKSI..CY...qIPPLVTKKTAVVVSPLLSL....................mqdqvmSLkqHGVKS...EYLGStqT
 1381- 1410 (35.17/15.84)	DISVSGQAEKG.AFDVLYMTPEKAVSLPSRF..............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.21|      43|    1061|      26|      69|      14
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   26-   69 (69.77/45.24)	GDQPLVWAVEVARVVAGEGAGLPSADLAGILVSNLcFAHNSPSL
 1089- 1131 (76.43/44.60)	GRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVL.YEETLPTL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03876 with Med33 domain of Kingdom Viridiplantae
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