<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03874

Description Uncharacterized protein
SequenceMAPPSMDYWLGFFRGAGDSIFDAIDAAIAVAASDHPAALRSRRDAIAERLYTAHLVPGAPPAGPPAGGGAAAADAPTAQLLLHPEGAASVPSLCSSDRAEVITDDGAVPRRDDDPVAAETERIKAILLNDQEKSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSELPLSFPQENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQSAMRQSRPQELCNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKSASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
Length457
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.864
Instability index59.12
Isoelectric point6.58
Molecular weight50559.63
Publications









Function






Annotated function


ECO:0000256	RuleBase:RU366036

GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP03874
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.22|      44|     241|     131|     176|       2
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  131-  176 (62.84/60.86)	QEKSEATLLELLRRlQQLELTVDT.LTVTEiGKAVSSYRK.HNSKQIR
  374-  419 (62.38/49.52)	DENSVRAKLELAKN.AKLELTNSAkLEVTK.RKLQEGYQEfDNAKKQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     326.36|     102|     224|       1|     109|       3
---------------------------------------------------------------------------
    1-  109 (165.06/95.22)	MAPPSMDYWlGFFRGAGDSI........F.DAIDAAIAVAASDHPAALRSR..RDaiAERLYTAHLVPGAPPAGPPAGGGAAAADAPTAQLLLHpegaASVP.SLCSSD.RAEVITDDGAVP
  220-  334 (161.30/78.65)	LSSPSMDEG.ALFATPSTSIrlselplsFpQENQGSKFFDGMDDDGNTRSNggRD..NGRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQSAMR....QSRPqELCNGQtREQFIAAMLARP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03874 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FPQENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQSAMRQSRPQELCNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKSASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
2) RDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFAT
247
197
457
233










Molecular Recognition Features






MoRF SequenceStartStop




1) MDYWLGFFR
6
14