<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03872

Description Uncharacterized protein
SequenceMAAPSAAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKVANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSDDVSAFDGTFSEQRIDKIDKLQKMNNVITIELIGHLLHDKWAAFTNRLQLLITKSSTLQTSTVALEAFQQLNLDVCNIFRENKHWLRRKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLIKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISVANQAASKAAMFVSRTNISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSARNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGTPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWRIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWAHEVDLRVLGRLSAGLRQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1288
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.119
Instability index40.34
Isoelectric point7.04
Molecular weight140588.28
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03872
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.69|      63|      72|     674|     745|       1
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  674-  745 (101.88/97.34)	NHpplEYCVMG..DGAPVGSQLTP..EYLLLLrnsqvvSIRSSARNRNTQKQLPVTSNPS.SEHPIFMDS..FPKLKLW
  748-  817 (89.81/64.10)	QH...QACLAStlSGFAHGTPVHKnvDSLLNL......MFRKANKESTSIGSLSGSSSISnSSGPGVDDShlWPQLPAW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     284.64|     125|     433|     402|     617|       2
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    4-   72 (83.20/20.27)	PSAAAAWVDWA..AEYTKA.AQAESRPPAEWAARVASV..VAAAGDAPWSPGLAEMLARALLYGGggaaWKYAE...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  432-  499 (65.48/64.59)	...............................................................................................................................................................................................................................................................................................................................aalaaglaspalllailstrviphrftrptayrlylellrrhgfnfafqmkvanfkkimqliddnlglskifgfstcepglvdaalddegllelipdkkahwptrsddvsafdgtfseqridkidklqkmnnvitielighllhdkwaaftnrlqllitksstlqtstvaleafqqlnldvcnifrenkhwlrrkfhpivtsnplsspngrclgasysaqwipidmyledcldgsiaatnsieilsglikalqavnratwhdaflalwiaslrlvqrerepiegpvphldtrvcmllsittlaivdiieesdsemnsnwkekrtsddlrkelmlslqtlgdyesllvpppciisvanqaASKAAMFVSRTNISSgymenVNDRTTNYsgnMW.HL.IVESCISRNL.LETSVYYWPGYINGHVNSITHAL
  500-  569 (70.72/85.93)	PSQLAAWSSFMkrAPLTQSlVNVLVATPAPSLAEVQKLyeVAVDGSDEDKVSAATILCGATLLRG....WNFQE...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1174- 1236 (65.25/10.83)	..........................................................................htvrlvvkllsssdpidfsggesqlvkhgpmlnvivtgispvdyvpifsfhglipelaaalmaicevfgslspsvswsprtgeeisahtvfsnafilllrlwkfnhppleycvmgdgapvgsqltpeyllllrnsqvvsirssarnrntqkqlpvtsnpssehpifmdsfpklklwyrqhqaclastlsgfahgtpvhknvdsllnlmfrkankestsigslsgsssisnssgpgvddshlwpqlpaweileavpfvvdaaltacshgrlfprelatglkdltdflpaslativsyfsaevtrgvwkpafmngtdwpspaanlsmveehikkivaatgvdvprlvtggstlgtlplplaafvsltitykldkaserflnlagpalenlaascpwpsmpivaalwtqkvkrwsdflvfsasrtvfhhnndavfqllrscftatlgmssttsvcscggiasllghgfgshcsgglspvapgilylrifrcikdcsilaedilrllmlsvkdiaettvsrhrsdkvrktkyvmrhgqvslssamtqvkvaaslgatlvwlsggtalvqslfqemlpswflsvqdlgrggaasggtvyklgghalaylAVYAGMFAWRIDPTP.....VSRRRERV...MWsHFeFLASALDGKIsLGCDLSLWRAYVSGFLGLVVECT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.76|      38|     432|     579|     617|       4
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  579-  617 (64.39/49.69)	LSSSDPIDFSGGESQLVKHGpMLNVIVTGISPVD....YVPIF
 1014- 1055 (66.38/45.57)	MSSTTSVCSCGGIASLLGHG.FGSHCSGGLSPVApgilYLRIF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.39|      22|      67|     841|     864|       5
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  841-  864 (29.97/24.90)	PReLATGLKDLTDfLPASLATIVS
  911-  932 (40.42/23.14)	PR.LVTGGSTLGT.LPLPLAAFVS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03872 with Med33 domain of Kingdom Viridiplantae
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