<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03868

Description Uncharacterized protein
SequenceMASSSSSSSSSLASSSGGGDAASASASASAAAAAGAIVVAVAVRGDGRASRRAARWAAANLAAHGAGAGRVALVHVIPPVSFVPSPSGERVPVEKMDAETVEMYAEDRRARAQEEVFLPLRRLFARTTVETVILEEPSVTAALVRYAADSGVRNLVVGSTSLNWFKRILRLRDVPSTVLKAMPCSCNVFVVSRHRLTIKFANQARTSKSSACVRTQSISHKSFSRIQKNWLLDKQSLHDHPEDGTPKSSGDTSYAGSHTCSSRSTSTNAGKSSGSHGRSLFGSLGRKTPGRDVNTDPDAIGRLKEIPYVALSSIDEDLQSQPVDEVAKLRKELQDTLVMYDKACEDLVHAKKKIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHKAEIVADMVIAEKTKVMDALLSTGKSCRRYSKREIQLATDNFSDAKKIGEGGYGNVYRCTLDHTEVAVKVIQQDSSDKIDEFLREVEILSQLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQQSLHWFLRIQIIFEVACGLAFLHATKPEPIVHRDLKPGNILLDKNYVSKIGDVGLAKLISDIVPEGLTEYRDTAVAGTLYYMDPEYQLTGTIRPKSDVYALGIIILQLLTGKRPHGLILSAEEAIKKDSISDVLDSSQIDWPIAEAEILAKLAVRCTALKCRDRPSLESEVLPEIESILSRITASPTLRSPNAAVPSHFICPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLQYLSIIPNHSLRVAIQQWKSQSS
Length806
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.235
Instability index53.43
Isoelectric point8.22
Molecular weight88274.67
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03868
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.38|      12|      18|     245|     258|       2
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  245-  258 (18.31/20.38)	TPKSSGDTSyaGSH
  265-  276 (22.07/14.89)	TSTNAGKSS..GSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.05|      17|      18|     363|     379|       4
---------------------------------------------------------------------------
  363-  379 (28.41/17.22)	EEAKKV..QDAL..HREELLK
  397-  417 (16.64/ 7.34)	EMAKTLfaQEAFskHKAEIVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.89|      12|     216|     492|     503|       5
---------------------------------------------------------------------------
  492-  503 (20.83/12.28)	EFLREVE.ILSQL
  711-  723 (16.06/ 7.94)	EVLPEIEsILSRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.51|      21|      26|     298|     318|       6
---------------------------------------------------------------------------
  298-  318 (35.12/22.76)	DAIGRL.KEI..PYVALSSIDEDL
  324-  347 (26.39/15.38)	DEVAKLrKELqdTLVMYDKACEDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.86|      19|      22|     120|     138|       8
---------------------------------------------------------------------------
  120-  138 (29.99/20.80)	LRRLFARTTVETVILEEPS
  143-  161 (29.87/20.68)	LVRYAADSGVRNLVVGSTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03868 with Med32 domain of Kingdom Viridiplantae
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