<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03863

Description Uncharacterized protein
SequenceMEIEEAGGAGEDELEMEAPSVSTVAIAVNGSRNSKHALKWALDKFVPEGKVLFQILHVRPTIKMVPTPMGNFIPITQVREDVATAYKKEVEWQANNMLLPYKKMCAQRKVEAEAVLLESDDVPTAISEEISKFSVCKLVLGSSSSIFRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESISSSTVSSPSSRSFSSSVPSEWGDTYGSANVSFHQPSLSSQRDQAIANMNKLSNRRASPSGSGGSEISNHDDTVLTSSHSINSETRFSSSSSGNSIYKSFNRDRSFDNSDQASVSDMATNLKHSHDQEYLKLEIERLRVKLRHLQKLNELAQKESLDANQKLHKLGIQDIEDEIKLKETELTEEKVRRLIRKKEREEQEVARREDQLRNENAESEATKQSNGNQEGDENKTGERIFVRCFDEYNRYTWEEIKASTLSLSEDLMIGRGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRSGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWPLNEAQELAFLALKCAEMRRRDRPDLSDHVLPALERLKDVATKAREMAFNGHQTAPPSHFICPILQEVMADPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSAIIDWRTKS
Length806
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.451
Instability index46.49
Isoelectric point6.16
Molecular weight90047.98
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03863
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     248.87|      60|     130|     260|     320|       1
---------------------------------------------------------------------------
  129-  180 (66.53/38.48)	EISKFSvcKLVLGSSSSI.FRRKNKGSKTATKICECIP...SFCTAYVVSKGKLSS......
  183-  236 (82.39/53.39)	..SATS..DAIGT.PESISSST..VSSPSSRSFSSSVPSEWG.DTYGSANVSFHQPSLSSQR
  260-  319 (99.94/58.97)	EISNHD..DTVLTSSHSINSETRFSSSSSGNSIYKSFNRDRSFDNSDQASVSDMATNLKHSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.15|      37|     130|     553|     593|       2
---------------------------------------------------------------------------
  553-  593 (51.76/53.16)	WEV..ATALMFLhSSKPEPIIHRDlKPAniLLDRNL..VSKIGDV
  681-  721 (56.39/39.38)	WPLneAQELAFL.ALKCAEMRRRD.RPD..LSDHVLpaLERLKDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.38|      45|     121|     611|     655|       3
---------------------------------------------------------------------------
  611-  655 (79.41/57.66)	KNTAPVGTF.CYIDPEYQRSGVVSMKSDVYALGIVILQL.LTAKSPM
  733-  779 (76.97/55.65)	HQTAPPSHFiCPILQEVMADPYVASDGYTYDRKAIELWLsMNDKSPM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03863 with Med32 domain of Kingdom Viridiplantae
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