<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03860

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGGRRDDGDDDSDSTLTLTPTTSASAAPPLATTEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEVLIFVCSWYLNCFGPEHNSNFALLFFFLLHLPDLKLFDEMDEDGNLRHNNDGSLGNKRENNGRRPTSHPALTKQEPPRNMGTVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length561
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.750
Instability index64.95
Isoelectric point5.81
Molecular weight62179.85
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03860
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.45|      17|      19|     360|     378|       1
---------------------------------------------------------------------------
  362-  378 (32.40/19.37)	NNG...RRPTSHPALTKQEP
  381-  400 (26.05/ 8.82)	NMGtveKVQSRRPELARQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.83|      19|      19|     445|     463|       2
---------------------------------------------------------------------------
  426-  444 (27.04/16.67)	QSKP...L.SSDSGP.GRPlRAAP
  445-  463 (32.73/21.94)	QQKP...FVEMKSRL.ARE.QVAV
  464-  485 (22.06/12.06)	ERKPaasHVD.KSRLpAQP.SAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.33|      18|      18|     140|     157|       4
---------------------------------------------------------------------------
  140-  157 (31.10/18.56)	EQEAAPAEEDEEQELDPE
  160-  177 (29.23/17.04)	ELEALTNEIDEESQVVGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03860 with Med26 domain of Kingdom Viridiplantae
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