<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03858

Description Uncharacterized protein
SequenceMAAAPPPPPSAARGDPPLLQAAEAARCAREASSSISVDGGAGAALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRVDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSVLKDRNERGHNYSKDISSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKPVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRIRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGIKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVVEYIL
Length1294
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.186
Instability index48.56
Isoelectric point7.83
Molecular weight141289.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03858
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.39|      61|     390|     835|     911|       1
---------------------------------------------------------------------------
  842-  904 (100.54/95.45)	LETVLA.ACAHGRLSS..RDLITGLR.NLADFLPASVAVIVSYFS...AEITRGLwkPVMLNGTDWPSPA
  914-  981 (88.85/49.70)	IEEALAsAGVHINISPriRPPIPMLPlPIATLISLSITVKMEEFNhlqGIIDKGV..EICATSSSWPSMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.75|      41|     434|       7|      58|       2
---------------------------------------------------------------------------
    7-   58 (55.81/65.08)	PPPSaargdppLLQAAEAArcAREA.................SSSISVDGGAGAALaaALVSNLCFAHN
  442-  499 (61.95/39.78)	PPPA.......VVQSANIA..ARKAlvalsvlkdrnerghnySKDISSIKAAGNML..HLIVEACIARN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.78|      17|     569|     687|     703|       3
---------------------------------------------------------------------------
  687-  703 (33.67/18.79)	LWKFHRPPVEYALSKHG
 1265- 1281 (33.11/18.36)	LWKWHECDLALSLLERG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.58|      23|      38|     250|     272|       5
---------------------------------------------------------------------------
  250-  272 (37.58/29.32)	LQRLQLIGALKSKN..FGTAHNLLG
  288-  312 (32.01/23.67)	LHKGNLLGSIVSTKpcSSAARSVFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.17|      30|     366|     705|     738|       6
---------------------------------------------------------------------------
  705-  738 (47.23/33.37)	FVCSEIsldfLLLLRNSHFALNSPYDVSRKSIFQ
 1077- 1106 (51.94/27.81)	FVCEEI....LKVVIERARALANECDSSRPHLLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.06|      33|     366|     646|     680|      10
---------------------------------------------------------------------------
  646-  680 (56.77/48.39)	AILMPLCeiFGSL..PSSDHRNCSFEEASVYSVFSCA
 1015- 1049 (54.29/39.06)	AQLIRSC..FSSFlgPLVDGRSCFVADRGVNRLLGQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.90|      29|      62|    1155|    1186|      13
---------------------------------------------------------------------------
 1155- 1186 (43.18/38.26)	GEARLGsAGPVcsSFEGFALAYV.LLVSGASTW
 1220- 1249 (53.72/34.25)	GNIELG.CGQV..TWRTYVICFVgLLVDFAPTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.97|      21|      24|     583|     605|      14
---------------------------------------------------------------------------
  583-  605 (32.53/30.42)	GWNIqeHVIQMVLKLLSTLLPLD
  610-  630 (39.44/29.15)	GFYI..HHMPMLHALISGISSID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03858 with Med33 domain of Kingdom Viridiplantae
Unable to open file!