<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03857

Description Uncharacterized protein
SequenceMAAAPPPPPSAARGDPPLLQAAEAARCAREASSSISVDGGAGAALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRVDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRMRKLECSFNDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSVLKDRNERGHNYSKDISSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKPVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRIRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGIKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVVEYIL
Length1303
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.180
Instability index48.51
Isoelectric point7.94
Molecular weight142398.78
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03857
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.21|      61|     392|     844|     920|       1
---------------------------------------------------------------------------
  851-  913 (100.46/83.52)	LETVLA.ACAHGRLSS..RDLITGL.RNLADFLPASVAVIVSYFS...AEITRGLwkPVMLNGTDWPSPA
  923-  990 (87.75/42.77)	IEEALAsAGVHINISPriRPPIPMLpLPIATLISLSITVKMEEFNhlqGIIDKGV..EICATSSSWPSMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     230.33|      74|      91|     346|     420|       2
---------------------------------------------------------------------------
  346-  420 (121.67/83.83)	ELAKTLQVLNR.....ATWQETFQALWISALRLIQRMRKLEcSFNDRGIP.EGPFPHLHSRLCMLLAIVPLSIASILKEES
  434-  513 (108.66/69.23)	ELLSSLQVLGQffgllSPPPAVVQSANIAARKALVALSVLK.DRNERGHNySKDISSIKAAGNMLHLIVEACIARNLVDTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.68|      29|      30|     685|     714|       3
---------------------------------------------------------------------------
  685-  703 (30.83/14.77)	...................VFS.CA.....FLCLLRLWKFHRPP
  705-  736 (36.10/19.95)	EYALSKHGVF............vCSeisldFLLLLRNSHFALNS
  737-  770 (34.75/14.72)	PYDVSRKSIFqldpsfqkpVYI.DS.....F.PKLRAWYFQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.97|      21|      24|     592|     614|       8
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  592-  614 (32.53/26.99)	GWNIqeHVIQMVLKLLSTLLPLD
  619-  639 (39.44/25.86)	GFYI..HHMPMLHALISGISSID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.67|      25|     883|     156|     180|       9
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  156-  180 (45.80/27.66)	SVIKILTD...CILEDCGLPTIDGDGHD
 1033- 1060 (39.86/23.15)	SFLGPLVDgrsCFVADRGVNRLLGQAHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.90|      29|      62|    1164|    1195|      12
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 1164- 1195 (43.18/38.19)	GEARLGsAGPVcsSFEGFALAYV.LLVSGASTW
 1229- 1258 (53.72/34.20)	GNIELG.CGQV..TWRTYVICFVgLLVDFAPTW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03857 with Med33 domain of Kingdom Viridiplantae
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