<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03853

Description Uncharacterized protein
SequenceMDSVSRNRNPTQESMHQTTESGTMEKNGSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSNDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSPIYTRNEPGESGLCFSSAPYSYMDGLSMPLPSVQRDYTPRAIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSNNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQNPVASGRVLPAWQSARIA
Length1043
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.546
Instability index49.20
Isoelectric point6.99
Molecular weight117584.69
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03853
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.15|      27|      56|     310|     336|       1
---------------------------------------------------------------------------
  310-  336 (46.85/31.64)	LEANNKRVFGNRSFR.PNQREIINATMS
  367-  394 (39.30/25.34)	LQANISAAYLSASMEwSEQQEILRELMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.95|      52|      54|     750|     803|       2
---------------------------------------------------------------------------
  750-  803 (79.57/61.18)	SVNQNVKKHRHDTLS.LHGAGKHLAKGEAARilRHLVIEEILIEDVKKSENYGSV
  805-  857 (81.38/56.35)	SVLKTNHKKSGDLLSgKHNVVLKFPTPEKAP..KMGVLDESSVPRINKTNQQSQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     263.44|      60|     271|     250|     309|       3
---------------------------------------------------------------------------
  250-  309 (108.62/70.87)	NEPGESG..LCFSSAP..YSYMDGLSMPLPSVQRDYTPRAIDISYTEGSGD.KQWSSTHFAWTKE
  523-  575 (85.12/53.88)	NHNKECG..IIYC.....LSRMD..CEKVAAKLREYGHKA...SHYHGSMDpEDRANIQKQWSKD
  612-  667 (69.69/42.73)	QECGRAGrdSQLSSCVlfYNYSDYIRLK.HMVTQGFAEQGTSAPRG.GSSQ.EQALETH......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.35|      15|      24|     157|     171|       5
---------------------------------------------------------------------------
  157-  171 (24.47/17.57)	LEMKDNLLAISHELI
  183-  197 (23.88/16.96)	LHQKRALLKKQIELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.23|      14|      35|     669|     682|       6
---------------------------------------------------------------------------
  669-  682 (24.92/14.12)	ENLLRMVSYCENDV
  707-  720 (24.31/13.62)	DNCLKELRWVEKDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03853 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDSVSRNRNPTQESMHQTTESGTMEKNGSHLPAGTKSC
1
38










Molecular Recognition Features






MoRF SequenceStartStop




NANANA