<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03851

Description Uncharacterized protein
SequenceMERATAAHPASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSTQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQCQVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKLTEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASPHVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSPEALLHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLVDTVMNFADENGTDEIIYQNGGGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAGYLHGPMMSL
Length989
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.521
Instability index60.90
Isoelectric point8.68
Molecular weight108464.33
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03851
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.86|      17|      21|     579|     595|       1
---------------------------------------------------------------------------
  556-  571 (24.77/10.96)	KPSVARVVSHS.ASIKS
  579-  595 (31.03/15.52)	RPEGAHAASPNITSVES
  603-  618 (31.81/16.09)	KPGTVRAASP.CTPVKS
  649-  664 (32.24/16.40)	KPETAGAASP.CASVKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     237.33|      45|      59|     172|     216|       2
---------------------------------------------------------------------------
  105-  145 (37.61/11.44)	....................QR.PSSQQQ....NVCTTPQNPGQVPDQHrasaPNSqIEASQEQTV
  152-  207 (66.46/24.97)	CYLNFNTTAispvamcvhpsQQ.PQSQQH....QQQAKQLHPTNVVGYN....PTS.LNQIQGQSV
  208-  244 (42.93/13.93)	SGQNFQQNH.........vlGQ.NASGSG....TQQ.RQLVETP....E....QHQ.LLRM.....
  245-  279 (48.34/16.47)	.....KQQH...........MR.GNQQQN....FTQRNQILPA.....Q....QAH.LGKMQIGHP
  280-  321 (41.99/13.49)	AVQNNQQN..............vGMSCQHmtppQCQVATAQQSSLGCDS....PQT.LEPI.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.21|      23|      24|     385|     407|       3
---------------------------------------------------------------------------
  385-  407 (38.78/27.39)	IIAIML.DL.LNTQKSNVRKGMQNI
  410-  434 (28.43/18.11)	IFQQYLgQLrLSISKSKARKTVAKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.32|      17|      35|     696|     712|       4
---------------------------------------------------------------------------
  696-  712 (29.54/16.86)	IHTLVSAAPPKAAHQAD
  732-  748 (27.78/15.40)	IETLLSSSPEALLHSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.36|      10|      26|     686|     695|       9
---------------------------------------------------------------------------
  686-  695 (17.13/ 9.63)	VANGGSSNQA
  715-  724 (17.23/ 9.74)	VQNGAEEMEA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03851 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVRRSQSLQAGTTPSTQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQ
2) PVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQC
3) SNQAIHTLVSAAPPKAAHQADDQVQNGAEEMEA
4) TCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESH
5) TQTVQPIQVASPHVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKP
89
163
692
458
530
143
300
724
495
627










Molecular Recognition Features






MoRF SequenceStartStop




1) LPYRPR
766
771