<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03850

Description Uncharacterized protein
SequenceMAPTKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKMWPYKVIPGPGDKPMIVVQYKGEEKQFSAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLFEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPRVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKSEDEEHKKKVDAKNSLENYAYNMRNTIQDEKIASKLPAEDKKKIEDAVEQAIQWLDNNQLAEVEEFEDKMKELEGLCNPIIAKMYQGAGADMGGGMDDDAPAAGGSGAGPKIEEVD
Length649
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.424
Instability index34.57
Isoelectric point5.10
Molecular weight71324.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03850
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.17|      70|     189|     142|     219|       1
---------------------------------------------------------------------------
  142-  219 (93.29/76.34)	STVKNAVVTVPAYFNDSQRQATKDagVIAGLNVMRIINePTaAAIAYGLDKKAT.svGEKNVLIFDLggGTFDVSLLTI
  336-  408 (112.87/64.91)	STVHDVVLVGGSTRIPRVQQLLQD..FFNGKELCKSIN.PD.EAVAYGAAVQAAilsGEGNEKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.87|      16|      21|      14|      33|       2
---------------------------------------------------------------------------
   14-   29 (33.50/25.65)	DLG..TTYSCVGVWQHDR
   36-   53 (26.37/10.20)	DQGnrTTPSYVGFTDTER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.49|      14|      26|      54|      67|       3
---------------------------------------------------------------------------
   54-   67 (25.75/18.52)	LIG....DAA.KNQVAMNP
   77-   95 (17.75/10.37)	LIGrrfsDASvQSDIKMWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.85|      18|      31|     526|     556|       4
---------------------------------------------------------------------------
  526-  544 (27.52/41.31)	VQDaEKYKSE.DEEHKKKVD
  560-  578 (26.33/ 7.80)	IQD.EKIASKlPAEDKKKIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.00|      23|     397|     103|     127|       5
---------------------------------------------------------------------------
  103-  127 (34.48/33.62)	GDKPMIVVqyKGEEKQFSAEEISSM
  503-  525 (38.52/28.72)	GQKNKITI..TNDKGRLSKEEIEKM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03850 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAGADMGGGMDDDAPAAGGSGAGPKIEEVD
2) KEEIEKMVQDAEKYKSEDEEHKKKVDAKNS
620
519
649
548










Molecular Recognition Features






MoRF SequenceStartStop




1) IKMWPYKVI
2) KIEEVD
91
644
99
649