<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03843

Description Uncharacterized protein
SequenceMPPPPPPLPLHHQIIKVARDEDFRSRIGNDGRYFDLVDFSAIDVFYVPNSLTVYEFKGTLMEKFGTPVQCQHLWWWARRLNKTYRVDRPLTTEEEKLSVSSLRHVDDTKFCSSSERGIKYVGSLYVKVSSRPSDILPKLRSLAGFCASEPIELYEVRFCTDANRFPDSEINRFISFVLVSHFDKQEIKFDPSVMCEAIDIHLTFSDSGITTGDIICYQKSLPQNWRIYSSVASFLQHVCDHKEEEWKRHILEEEIAVLKRQADTDRLQKDESMTVCDQLKHERDNAVRQVNELCDQSTPVILNFSRKDLEQAIEHFKNTGDFGDTEYGHLYKGMIHYTIVAIKLSSSQSLFQQEAFALIYEWLPNGNLEDRIVCTNNSPPLSWHNRTQIIGEICCALLFLHSNKPTALVHSDLRPCNILIDANYRSKLCNFGLSNLFLQPGTCPPNLMARLPYMDPEFNTTGELTTLSDVYSLGVIILQLLTEMPPLTLSEKVAEALESDSLHLLIDKSAGDWPYIQAKQLALIGLSCTEMTRKKRPDLLTKVWKVVEPLTRKPLAATWPYLQSATGDSCVPSAFICPISLEIMKDPQMASDGFTYEAEAIRSWFDRGNILGLR
Length614
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.09
Grand average of hydropathy-0.261
Instability index51.64
Isoelectric point5.64
Molecular weight70107.39
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03843
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.29|      15|      44|     510|     528|       2
---------------------------------------------------------------------------
  510-  528 (26.04/21.08)	AGDWPYIQAKqlalIGLSC
  556-  570 (31.25/16.31)	AATWPYLQSA....TGDSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.44|      41|     281|     131|     171|       3
---------------------------------------------------------------------------
  131-  171 (73.69/41.89)	RPSDILPKLRSLAGFCASEPIELY.EVRFCTD..ANRFP..DSEIN
  414-  459 (64.75/36.01)	RPCNILIDANYRSKLCNFGLSNLFlQPGTCPPnlMARLPymDPEFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.99|      10|      20|     215|     226|       6
---------------------------------------------------------------------------
  215-  226 (16.86/12.94)	ICYQKslPQNWR
  238-  247 (20.14/ 9.40)	VCDHK..EEEWK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03843 with Med32 domain of Kingdom Viridiplantae
Unable to open file!