<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03842

Description Uncharacterized protein
SequenceMPPPPPPLPLHHQIIKVARDEDFRSRIGNDGRYFDLVDFSAIDVFYVPNSLTVYEFKGTLMEKFGTPVQCQHLWWWARRLNKTYRVDRPLTTEEEKLSVSSLRHVDDTKFCSSSERGIKYVGSLYVKVSSRPSDILPKLRSLAGFCASEPIELYEEIKFDPSVMCEAIDIHLTFSDSGITTGDIICYQKSLPQNWRIYSSVASFLQHVCDHKEEEWKRHILEEEIAVLKRQADTDRLQKDESMTVCDQLKHERDNAVRQVNELCDQSTPVILNFSRKDLEQAIEHFKNTGDFGDTEYGHLYKGMIHYTIVAIKLSSSQSLFQQEAFALIYEWLPNGNLEDRIVCTNNSPPLSWHNRTQIIGEICCALLFLHSNKPTALVHSDLRPCNILIDANYRSKLCNFGLSNLFLQPGTCPPNLMARLPYMDPEFNTTGELTTLSDVYSLGVIILQLLTEMPPLTLSEKVAEALESDSLHLLIDKSAGDWPYIQAKQLALIGLSCTEMTRKKRPDLLTKVWKVVEPLTRKPLAATWPYLQSATGDSCVPSAFICPISLEIMKDPQMASDGFTYEAEAIRSWFDRGNILGLR
Length584
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.09
Grand average of hydropathy-0.264
Instability index51.97
Isoelectric point5.59
Molecular weight66536.40
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03842
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.92|      15|      39|     208|     222|       1
---------------------------------------------------------------------------
  185-  199 (19.45/11.44)	ICY...QKSlpQNWR..IYS
  208-  222 (28.83/20.50)	VCD...HKE..EEWKRHILE
  245-  262 (20.65/12.60)	VCDqlkHER..DNAVRQVNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.61|      20|      32|     110|     135|       2
---------------------------------------------------------------------------
  110-  135 (27.21/37.26)	FCSSseRGIKyvgsLYVKVSSRPS......DI
  145-  170 (32.41/22.12)	FCAS..EPIE....LYEEIKFDPSvmceaiDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.30|      23|      32|     297|     319|       3
---------------------------------------------------------------------------
  297-  319 (40.39/32.08)	YGHLYKGMIHYTIVAIKLSSSQS
  330-  352 (43.91/35.59)	YEWLPNGNLEDRIVCTNNSPPLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.73|      17|      39|     401|     417|       4
---------------------------------------------------------------------------
  401-  417 (33.02/22.34)	FGLSNLFLQPGTCPPNL
  441-  457 (29.71/19.33)	YSLGVIILQLLTEMPPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.29|      15|      43|     480|     498|       5
---------------------------------------------------------------------------
  480-  498 (26.04/23.43)	AGDWPYIQAKqlalIGLSC
  526-  540 (31.25/18.14)	AATWPYLQSA....TGDSC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03842 with Med32 domain of Kingdom Viridiplantae
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