<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03839

Description Uncharacterized protein
SequenceMDAAALGAAAGAPNPAAPVGGDQQPRTERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKLLPEMEAEEATKRDNLLSGITNLTVSGQIEKLKTRIDMIGSACETAEKVIAESRKNYGLGARQGANLGPTLDKAQAAKIQEQEGLLRAADCVYRETKGRCVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
Length493
PositionHead
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.691
Instability index50.75
Isoelectric point9.49
Molecular weight53503.61
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03839
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.75|      15|      17|     265|     281|       1
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  265-  280 (24.50/ 8.30)	MMNTpSPQQHLTAQQH
  284-  298 (28.25/ 6.69)	LMQT.SQQQQLHAQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.90|      18|      19|     440|     458|       2
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  440-  458 (32.50/18.39)	FGMGgANST....SMMGMQQQQQ
  459-  480 (25.41/ 9.19)	FNMQ.ANAQnlqqGMTGLQNQTQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      18|      18|     331|     348|       3
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  331-  348 (33.33/12.42)	QQ.QMQYNQALSQQYQNRQ
  350-  368 (25.13/ 7.50)	QAgRMQPGMSQSQLNQGNQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.78|      30|      36|     370|     399|       4
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  370-  399 (50.86/26.18)	RSHISQFTGAANSAMFTA.AQASSNSQMMAN
  407-  437 (49.92/25.55)	QSLLPQMQGLNQYSLTGGhPQRSHPSQMLTD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.42|      21|      40|     170|     209|       9
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  170-  190 (34.53/40.95)	PTLDKAQAAKIQEQEGLL..RAA
  212-  234 (33.89/ 7.89)	PNVVNAQGNPMQVSGGQLlgRPA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.80|      24|      39|      93|     116|      11
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   93-  116 (38.20/29.57)	VEDIK.KVSKLLPEMEAEE...ATKRDN
  130-  157 (29.60/21.37)	IEKLKtRIDMIGSACETAEkviAESRKN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03839 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
209
493










Molecular Recognition Features






MoRF SequenceStartStop




NANANA