<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03836

Description Uncharacterized protein
SequenceMAAPPTPSPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDGIAERLYTALVVLPPPPPAARAPGPPGGRRRRGGGDAGGPAAVVTDDDDGAAAAVAPRGDCHDRVAAEAFRVKAALSNAQEKTEAELLELLRALQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAAFFATPYIRTNGEESAQQHYPANQEPAKKQLPMGQRYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSAAAHGPWTPQKMHLEPKFSEMRPKQQPDTSVAQRRPKPTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNGKVDALVLDGLKQISRSPMCKME
Length400
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.689
Instability index58.63
Isoelectric point7.73
Molecular weight43713.65
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03836
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.81|      50|      58|     241|     294|       1
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  241-  294 (85.08/46.59)	SAQQHYPanQEPAKKQL.PMGQRYDPEQnwKLDQS.AMRQSQP..YEPSNWQKKQQSV
  302-  355 (79.73/34.34)	SAAAHGP..WTPQKMHLePKFSEMRPKQ..QPDTSvAQRRPKPtmADQLSSQVDQNSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.77|      29|      31|      47|      76|       2
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   47-   76 (50.95/27.02)	RRDGiAERLYTALVVLPPPPPAARAPGPPG
   80-  108 (51.82/23.96)	RRGG.GDAGGPAAVVTDDDDGAAAAVAPRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.58|      27|      36|     117|     143|       4
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  117-  143 (39.90/27.10)	EAFRVK...AALSNAQEKTEAELLELLRAL
  151-  180 (37.68/25.23)	DAIRVTeigTAVKPLRKHGSKQIRQLVRSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03836 with Med26 domain of Kingdom Viridiplantae
Unable to open file!