<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03835

Description Uncharacterized protein
SequenceMAAPPTPSPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDGIAERLYTALVVLPPPPPAARAPGPPGGRRRRGGGDAGGPAAVVTDDDDGAAAAVAPRGDCHDRVAAEAFRVKAALSNAQEKTEAELLELLRALQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAAFFATPCTSIQLSEFFDEMDDDGNIRTNGEESAQQHYPANQEPAKKQLPMGQRYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSAAAHGPWTPQKMHLEPKFSEMRPKQQPDTSVAQRRPKPTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNGKVDALVLDGLKQISRSPMCKME
Length417
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.688
Instability index58.86
Isoelectric point5.91
Molecular weight45598.60
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03835
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.53|      18|      58|     258|     275|       2
---------------------------------------------------------------------------
  258-  275 (34.21/18.79)	SAQQHYPANQEPAKKQL.P
  295-  309 (23.42/10.63)	QSQPYEPSNWQ.KKQQ...
  319-  335 (27.90/14.01)	SAAAHGP..WTPQKMHLeP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.77|      29|      31|      47|      76|       3
---------------------------------------------------------------------------
   47-   76 (50.95/28.39)	RRDGiAERLYTALVVLPPPPPAARAPGPPG
   80-  108 (51.82/25.19)	RRGG.GDAGGPAAVVTDDDDGAAAAVAPRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.23|      27|     209|       7|      34|       4
---------------------------------------------------------------------------
    7-   34 (46.27/33.17)	PSPSLDYwRGFFSGARASI.....FDAI..DAAIR
  219-  252 (43.96/25.53)	PSPPMDE.AAFFATPCTSIqlsefFDEMddDGNIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.58|      27|      35|     117|     143|       5
---------------------------------------------------------------------------
  117-  143 (39.90/27.48)	EAFRVK...AALSNAQEKTEAELLELLRAL
  151-  180 (37.68/25.59)	DAIRVTeigTAVKPLRKHGSKQIRQLVRSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03835 with Med26 domain of Kingdom Viridiplantae
Unable to open file!