<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03829

Description Uncharacterized protein
SequenceMEAAAGAGGAIGGSGREAAAEEEDGGEQWLEEEAEAEAVYCAVGKEAVKEWKANLMWVLAAFPWRRRRSRIVLIHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEERISKVLDDLLDICKSQKVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDKAYSRKMRAPRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTITTPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQTREVDARAAELELQITSSERMMRDLEAKLSESYDLLHQLRRERRRDDVPAEAMAGSEAGDQRLTFLRLGLPELEEATNHFDESVRIGGGDGSRGSVYRGDLRSMAVAVKMIGRDVAVDEVGFCREVEAVGRARHPNLVTLVGACPEARAVVHEFVPGGSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQPRATVHGDVRPANILLGEECCSSKLAGLGMCRLVRSSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKAWHEVFDASSGGWPLEVAREVALVGLKCCDVEEEPAGARRPGELLEEACGVLEAAMSAAPGRSWSSVSSSSDGGEGGAPSYFVCPILKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLPRRELVPNHPLRDAIHHWRLRRAMRTNFTTGLDSYYY
Length866
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.474
Instability index57.60
Isoelectric point5.43
Molecular weight94962.48
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03829
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.64|      78|      99|     460|     542|       1
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  460-  542 (118.94/64.30)	VPAEAMAGSEAGDqRLTFLRLGLP..ELEEATNHFDESVRIGGGDGSRGSVYrGDLRSMAVavkMIGRDVA...VDEVGFCREVEAVG
  562-  644 (127.70/57.55)	VVHEFVPGGSLED.RLAGAAPALPwhELCGVAHRACSALAFLHSTQPRATVH.GDVRPANI...LLGEECCsskLAGLGMCRLVRSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     313.21|      70|      70|     209|     278|       2
---------------------------------------------------------------------------
  161-  207 (42.21/19.89)	................SDkaYSRKMRAPR.....SKKARKVQLKASP...SCKIWFVC......KG...nlicTREVNEG
  209-  278 (117.51/68.88)	NRTGSSTTITTPRSSTSD..YSRSRSSPRV.HSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRG.......TEGFNHE
  280-  349 (81.64/45.54)	VAVASSSTV..PVSENVE..AVQRSAAAVV.QSL..QEIEEDSPTPSGHGSEDAGDV..SDAYDK.fkdavieAENLRHE
  361-  422 (71.86/39.19)	ERDLADATRIANEAESSQ..QREARHRKEVeERLARERAAMEQDRRELDDILEQT..REVDA..RA.......AE.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.74|      32|      34|     728|     759|       3
---------------------------------------------------------------------------
  697-  722 (25.44/ 8.73)	........EAAGGSKAWHEVFDASSGgwPLEVAR
  728-  759 (54.33/26.63)	GLKCCDVEEEPAGARRPGELLEEACG..VLEAAM
  764-  794 (50.97/24.55)	GRSWSSVSSSSDGG.EGGAPSYFVCP..ILKEVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.71|      14|      73|      20|      33|       5
---------------------------------------------------------------------------
   20-   33 (26.42/14.39)	AEEEDGGEQWLEEE
   96-  109 (24.29/12.68)	AEEEVNAYRQLEEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03829 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NRTGSSTTITTPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQT
209
413










Molecular Recognition Features






MoRF SequenceStartStop




NANANA