<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03828

Description Uncharacterized protein
SequenceMEAAAGAGGAIGGSGREAAAEEEDGGEQWLEEEAEAEAVYCAVGKEAVKEWKANLMWVLAAFPWRRRRSRIVLIHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEERISKVLDDLLDICKTWVANKVAEKNSQVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDKAYSRKMRAPRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTITTPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQTREVDARAAELELQITSSERMMRDLEAKLSESYDLLHQLRRERRRDDVPAEAMAGSEAGDQRLTFLRLGLPELEEATNHFDESVRIGGGDGSRGSVYRGDLRSMAVAVKMIGRDVAVDEVGFCREVEAVGRARHPNLVTLVGACPEARAVVHEFVPGGSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQPRATVHGDVRPANILLGEECCSSKLAGLGMCRLVRSSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKAWHEVFDASSGGWPLEVAREVALVGLKCCDVEEEPAGARRPGELLEEACGVLEAAMSAAPGRSWSSVSSSSDGGEGGAPSYFVCPILKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLPRRELVPNHPLRDAIHHWRLRRAMRTNFTTGLDSYYY
Length876
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.473
Instability index56.98
Isoelectric point5.43
Molecular weight96075.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03828
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.64|      78|      99|     470|     552|       1
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  470-  552 (118.94/78.13)	VPAEAMAGSEAGDqRLTFLRLGLP..ELEEATNHFDESVRIGGGDGSRGSVYrGDLRSMAVavkMIGRDVA...VDEVGFCREVEAVG
  572-  654 (127.70/69.95)	VVHEFVPGGSLED.RLAGAAPALPwhELCGVAHRACSALAFLHSTQPRATVH.GDVRPANI...LLGEECCsskLAGLGMCRLVRSSG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     328.41|      70|      70|     219|     288|       2
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  163-  217 (61.73/36.92)	......TDLVMGAASDKAYSRKMRAPR.....SKKARKVQLKASP...SCKIWFVC......KG...nlicTREVNEG
  219-  288 (116.01/77.01)	NRTGSSTTITTPRSSTSDYSRSRSSPRV.HSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRG.......TEGFNHE
  290-  359 (80.28/50.62)	VAVASSSTV..PVSENVEAVQRSAAAVV.QSL..QEIEEDSPTPSGHGSEDAGDV..SDAYDK.fkdavieAENLRHE
  371-  432 (70.39/43.31)	ERDLADATRIANEAESSQQREARHRKEVeERLARERAAMEQDRRELDDILEQT..REVDA..RA.......AE.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.74|      32|      34|     738|     769|       3
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  707-  732 (25.44/ 9.36)	........EAAGGSKAWHEVFDASSGgwPLEVAR
  738-  769 (54.33/28.21)	GLKCCDVEEEPAGARRPGELLEEACG..VLEAAM
  774-  804 (50.97/26.02)	GRSWSSVSSSSDGG.EGGAPSYFVCP..ILKEVM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.62|      33|      73|      20|      54|       5
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   20-   54 (52.66/35.96)	AEEEDGGEQWLEEEAEAEAVYCAVgkEAVKEWKAN
   96-  128 (55.96/32.24)	AEEEVNAYRQLEEERISKVLDDLL..DICKTWVAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03828 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NRTGSSTTITTPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQT
219
423










Molecular Recognition Features






MoRF SequenceStartStop




NANANA