<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03826

Description Uncharacterized protein
SequenceMQLRLHIPPSVDLFPFPQTARAHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHPARSSIADLFTLYLGMNSKQRVEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSPIKGAEFSSPGQLGLTARGDQSRRGAEISYLHHLSCRIILAGLESDLKPATHAVIFQHMVNWLVNWDQRPHGVDQADALQLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWRQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAIVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIHLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLLVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPYTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length1673
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.082
Instability index47.15
Isoelectric point6.99
Molecular weight187476.62
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03826
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      15|      17|      38|      53|       1
---------------------------------------------------------------------------
   38-   53 (22.69/15.72)	AH.RTTPVAGDGSgASA
   57-   72 (23.66/11.29)	AHgQRQPMSPAIS.ASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.47|      15|      80|    1320|    1335|       2
---------------------------------------------------------------------------
 1320- 1335 (24.14/17.33)	PyTSSAGGISNSDGQR
 1403- 1417 (27.33/14.67)	P.TSSGGGVEPVGANR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.28|      56|     183|     914|     969|       3
---------------------------------------------------------------------------
  914-  969 (96.52/59.75)	FTETLNRITIISLAITMKTRGIAEVEHIIHL..QPLLEQ.IMATSQHTWSEKTLRYFPP
 1100- 1158 (90.76/55.73)	WTHELLPLDILLLALIDRDDDPYALRLVINLleRPELQQrIKAFCTSRSPEHWLKNQPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.63|      16|     183|    1278|    1294|       4
---------------------------------------------------------------------------
 1278- 1294 (25.03/20.29)	PPEyFANLLFGLVNNVI
 1457- 1472 (29.60/18.17)	PPE.FHTLLYAEAARII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.43|      23|     183|     102|     146|       5
---------------------------------------------------------------------------
   15-   37 (41.44/13.80)	PFPQTARAHQVRSATL...LNPRSEQ
  113-  138 (35.99/30.23)	PTRETSNKLQKRVTAMnrdLPPRDEQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.50|      25|     182|     343|     399|       6
---------------------------------------------------------------------------
  344-  368 (46.51/82.80)	HGVDQADALQLQTLRLERPLHEWMH
  474-  498 (46.99/13.09)	HGEDLANSIPKGGLDWERALRCLRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|      18|     623|     638|       7
---------------------------------------------------------------------------
  623-  638 (26.29/13.58)	SSDPRKVETTRKIISF
  644-  659 (27.34/14.40)	SLDPNNISPQSILLDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.22|      27|     392|     665|     692|       9
---------------------------------------------------------------------------
  665-  692 (42.37/37.04)	TLRIWSFNTSIREHLNSDqLQKGKQIDE
 1060- 1086 (46.85/35.41)	TANIYTMVDVLLHHIQLE.LQRGHQIQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.71|      41|     267|    1337|    1380|      14
---------------------------------------------------------------------------
 1337- 1380 (59.44/52.55)	FYQNQdpGSYTQlVLETAAIEILSLCVPASQIVSSLVQ.IIAHVQ
 1612- 1653 (67.27/46.42)	MYEGQ..GGPVQ.STSKPKLEILTLCGKVMEILRPDVQhLLSHLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.55|      25|     267|     238|     272|      15
---------------------------------------------------------------------------
  201-  225 (39.92/12.40)	P.SLLNVVSSVEVPMGQGVSVTTGGP
  246-  271 (39.63/25.21)	PtSPLSAMNTIGSPTQSGIDQPIGAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03826 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHP
22
89










Molecular Recognition Features






MoRF SequenceStartStop




NANANA