<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03824

Description Uncharacterized protein
SequenceMDGVGLGVHRRWDTSGSGSQYSFRTSVSSVAEISTEVGVEVSPPPPPLAAAADKVFVAVAADVKYGKSALQWALQNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYTKMNTKQVNDYRNKEREKAEEKLDEYLLICRKLKVSCEKLIIEEDDIAKGLTDLVALHGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAHTVASTLSSSSISSRMRSMSLHPSESEASSSSGSPRHNLNRSRTEVAKYPSQGSGTAPSQLFGHSDQDVNDQPTRTAMGSIDSWDEFERSQNSCYDSSRNSDTVRVSGSAMQQPMYEPDDDHFVSPRKLENSGDDADIYGRLQEALSETQDLKRETYEESTKQLENLYQKEVMHRKITEEALEKQIQETEETERHCNALYDKLHDVEEQKLMVEQHITEMEAVLKEREDRLHDVEEQKFTVEQRITEMQAVLKEHKDKLHDVEEQKLMVEHRITEIRSVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVSESQDLRLKNKQRISMPGEDLNTEFSSYELEQATRGFDQELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQPEFDQEIAVLSRVRHPNLVTLIGSCREAFGLVYEFLPKGSLEDRLACLNNTPPLTWQVRTRIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFGICRLLIQTNTGAAAAATTRLYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGGLHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLATDVWKVVEPLMKAASLTAGRPSFVARPDDSPPPSYFVCPIFQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQRHQPQEEDDDFTLQLHGLVLLISQRQEAAMDSDGEEYDAMWSARCSVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLSTDGANIVLAHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEYGPHLPNGNERTKFQDSPQADGDCIPIMQDMVYLQWPSDMHKFNRSCPKRQIFMTRDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQRKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTEIKAHEEKLAESIRFIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDTQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSPMTNLSLENRELTPNRVLRSAILEWRQHRR
Length1946
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.599
Instability index51.11
Isoelectric point5.68
Molecular weight220563.04
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03824
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     329.11|      39|      54|     430|     468|       1
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  398-  428 (23.74/12.09)	...........QKEVMHRKITEeaLEKQ..........IQETEE...TE..RHCNA.L.
  429-  467 (68.78/53.39)	Y..DKLHDVEEQKLMVEQHITE..MEAV..........LKERED...RL..HDVEE.QK
  468-  491 (32.19/19.84)	F..T....V.......EQRITE..MQAV..........LKEHKD...KL..HDV.....
  492-  520 (39.39/26.45)	.........EEQKLMVEHRITE..IRSV..........LKEREE...KL.....AE.SK
  521-  551 (20.92/ 9.51)	YllQVLQ.ADKEKL..QQ...E..RDAA..........VSESQD..lRL..KN......
 1343- 1385 (37.86/25.04)	Y..DELQDTKKQKLLLEQHISE..IKSA......akdyVQEITEyfiQE...SCEE...
 1386- 1423 (38.60/25.72)	A..KKFQKIKMDLLAMLQRVKD..VENL............NRNE...KMqrKDMEE..K
 1442- 1476 (45.15/31.72)	Y..HELKDVKEQKLCLE.R.....LDS...........SKETKR...RR..KAESEmLS
 1478- 1516 (22.47/10.93)	L..KKVHDLEHQYL...NELKR..REAVeetfarqkeeIQETKR...EL..........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     390.23|      62|      91|     635|     696|       2
---------------------------------------------------------------------------
  584-  631 (75.33/54.09)	.....IG..EGGFGSV.Y....KGTLRN....TTVAIKLLHPHSMQGQPEFDQEI.AVLS..RVRHP
  632-  693 (116.28/88.38)	NLVTLIGSCREAFGLV.YEFLPKGSLED....RLACLNNTPPLTWQVRTRIIYEMCSALSFLHSNKP
  694-  730 (26.97/13.59)	HPIVH.GDLKPANILLdANFVSK..LGDfgicRLLIQTNT...........................
 1602- 1644 (56.37/38.21)	.....IG..TGRFMNV.Y....KGFIRN....TAITVMLLHPQGLQGQLEFHQEV.VVLS.......
 1650- 1711 (115.27/87.54)	NVMMLIGACPEAFGMV.YEFLPNGSLED....QLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     143.15|      33|      72|      76|     110|       3
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   76-  106 (45.36/39.44)	................................................NLAKDGAKVVIAHVHCPAQMIpmMGAKV..HYT
  107-  179 (30.61/18.00)	KMNT....kqvndyrnkerekaeekldeyllicrklkvscekliieedDIAK.GLTDLVA.LHGVTKLV..MGAAAdkHYS
 1036- 1062 (39.31/25.63)	................................................NLSTDGANIVLAHVHSPAQTL....SKV..HCT
 1063- 1139 (27.87/15.60)	RMKPeeiseylmlakeeaeknldeyaliakstgkdmktdcqkvlidmdDVAK.GLEELIT.LHGITRLV..MGAAAdqHYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     785.29|     195|    1001|     739|     942|       4
---------------------------------------------------------------------------
  748-  942 (395.32/328.25)	GTFAYMDPEFLTTGELTPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGGLHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLATDVWKVVEPLMKAASLTAG.RPSFVARPDDSPPPSYFVCPIFQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQ
 1751- 1946 (389.98/304.10)	GTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGcKQAFEALSDDTQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSPMTNLSLENRELTPNRVLRSAILEWRQHRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     297.82|      98|     959|       1|     150|       5
---------------------------------------------------------------------------
    1-  135 (152.29/100.91)	MDGVGLGVHRRWDTS..GSGSQY....SFRTSVSSVAEISTEVGVEVspPPPPLAAAADKVFVAVAADVKYGKSALQWALQnlakdgakvviahvhcpaqmipmmgakvhytkmntKQVNDYRNKEREKAEEKLDEYLLIC
  957- 1091 (145.53/88.39)	LHGLVLLISQRQEAAmdSDGEEYdamwSARCSVSSSAGSLQDAGDQW..DEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQ....nlstdganivlahvhspaqtlskvhctrmkpEEISEYLMLAKEEAEKNLDEYALIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.28|      22|      22|     279|     300|       6
---------------------------------------------------------------------------
  260-  277 (22.22/10.54)	.SSGS....PR.HNLNRSRTEVAK
  279-  300 (39.80/25.78)	PSQGS.GTAPS.QLFGHSDQDVND
  302-  325 (26.26/14.05)	PTRTAmGSIDSwDEFERSQNSCYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.93|      18|      98|    1325|    1342|       7
---------------------------------------------------------------------------
 1325- 1342 (32.70/25.58)	LARQRLEIDEMKRRHNTL
 1424- 1441 (32.23/25.09)	IARQRMEIEETKRQRDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.81|      15|     959|     136|     150|       9
---------------------------------------------------------------------------
  136-  150 (24.69/18.07)	RKLKVSCEKLIIEED
 1096- 1110 (27.11/20.70)	KDMKTDCQKVLIDMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.31|      41|     861|     352|     392|      12
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  352-  392 (69.93/39.59)	FVSP.....RKLENSGDDADIYGRLQEALSETQDLKRETYEESTKQ
 1245- 1290 (65.38/36.55)	FSSPacdpqQEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03824 with Med32 domain of Kingdom Viridiplantae
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