<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03822

Description Uncharacterized protein
SequenceMASGEPRPPSPAAVAVAVRPGGSAPPRGGPPPTSSPLETETAAPPQPPFPSSTSSPRSGGEQVPAARVAREAAEAYARDRHARAQEALRPFRRIFAAANATVETVVLEGDGVAEALVRYAANSGVRSLVIGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQMSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSWCQSRVSHCGPTNARQSSESHGQILFNSLGAKTTGIEGYKNHGFRSPFKEAHYADSNSSEECQSIDEVAKLRKELQDTLVMYDKACEDLVHAKKKIQVLASECSEEARKVEHALQKEEALKQVVADEKAKHLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKKHEIELATDNFSEARKIGEGGYGNVYRCTIDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNGLIVSVENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRILPNLSVIPNHSLRAAIQQWKSQSAHAKS
Length769
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.364
Instability index57.79
Isoelectric point8.77
Molecular weight85140.23
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03822
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.99|      29|      33|     698|     728|       1
---------------------------------------------------------------------------
  698-  728 (46.17/47.18)	HFICPIMQEVMNDPYVAADgHTYeQQAIKAW
  732-  760 (50.82/39.65)	HKVSPVTRRILPNLSVIPN.HSL.RAAIQQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.10|      10|      33|      20|      29|       2
---------------------------------------------------------------------------
   20-   29 (20.25/ 9.53)	PGGSAPPRGG
   39-   48 (17.80/ 7.47)	TETAAPPQPP
   50-   59 (17.06/ 6.86)	PSSTSSPRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.15|      27|      33|     300|     326|       3
---------------------------------------------------------------------------
  300-  326 (44.76/37.96)	DKACEDLVHAKKKIQVLASECSEEARK
  334-  360 (35.79/28.61)	EEALKQVVADEKAKHLEAIEEVEQAKK
  394-  417 (37.60/30.50)	SKNCRR..YKKHEIE.LATDNFSEARK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.84|      11|      20|     642|     652|       4
---------------------------------------------------------------------------
  642-  652 (18.93/11.72)	PLVEAEMLAKL
  665-  675 (19.92/12.72)	PGLESEVLPKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.55|      12|      20|      97|     109|       5
---------------------------------------------------------------------------
   97-  109 (15.25/17.76)	AANATVETVVLeG
  120-  131 (20.30/16.56)	AANSGVRSLVI.G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03822 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MASGEPRPPSPAAVAVAVRPGGSAPPRGGPPPTSSPLETETAAPPQPPFPSSTSSPRSGGEQVPAARVAREAAEAYARDRHA
1
82










Molecular Recognition Features






MoRF SequenceStartStop




1) SPAAVAVAV
10
18