<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03821

Description Uncharacterized protein
SequenceMASGEPRPPSPAAVAVAVRPGGSAPPRGGPPPTSSPLETETAAPPQPPFPSSTSSPRSGGEQVPAARVAREAAEAYARDRHARAQEALRPFRRIFAAANATVETVVLEGDGVAEALVRYAANSGVRSLVIGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQMSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSCLGAKTTGIEGYKNHGFRSPFKEAHYADSNSSEECQSIDEVAKLRKELQDTLVMYDKACEDLVHAKKKIQVLASECSEEARKVEHALQKEEALKQVVADEKAKHLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKKHEIELATDNFSEARKIGEGGYGNVYRCTIDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNGLIVSVENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRILPNLSVIPNHSLRAAIQQWKSQSAHAKS
Length742
PositionTail
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.343
Instability index57.93
Isoelectric point8.73
Molecular weight82144.04
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03821
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.99|      29|      33|     671|     701|       1
---------------------------------------------------------------------------
  671-  701 (46.17/36.91)	HFICPIMQEVMNDPYVAADgHTYeQQAIKAW
  705-  733 (50.82/31.00)	HKVSPVTRRILPNLSVIPN.HSL.RAAIQQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.01|      20|      21|       6|      26|       2
---------------------------------------------------------------------------
    6-   26 (34.33/19.90)	PrPP..SPAAVAVAVRPGGSAPP
   30-   45 (24.80/ 9.61)	P.PPtsSPLETETA......APP
   47-   64 (24.89/ 9.41)	..PP..FPSSTSSPRSGGEQVP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.90|      27|      33|     273|     299|       3
---------------------------------------------------------------------------
  273-  299 (44.24/30.59)	DKACEDLVHAKKKIQVLASECSEEARK
  307-  333 (36.96/24.35)	EEALKQVVADEKAKHLEAIEEVEQAKK
  367-  390 (38.70/25.84)	SKNCRR..YKKHEIE.LATDNFSEARK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.33|      17|      26|      86|     107|       5
---------------------------------------------------------------------------
   86-  107 (21.09/25.99)	EALrpfrrIFAAANATVETVVL
  114-  130 (28.24/17.63)	EAL.....VRYAANSGVRSLVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.03|      18|      33|     152|     169|       6
---------------------------------------------------------------------------
  152-  169 (29.71/17.27)	LKTTEISCNVFVVSKRRL
  186-  203 (29.32/16.96)	LRIQSVSQKAFAQSYRSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03821 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MASGEPRPPSPAAVAVAVRPGGSAPPRGGPPPTSSPLETETAAPPQPPFPSSTSSPRSGGEQVPAARVAREAAEAYARDRHA
1
82










Molecular Recognition Features






MoRF SequenceStartStop




1) SPAAVAVA
10
17