<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03815

Description Uncharacterized protein
SequenceMTLTHTYPAPSHGPRQERGVCIGNPLVWDPNPTPPALCLTRRPHPLFALKPQPHPTPPSPPACGDNAAASLPLSLSSRYWSLAPRRRAATVISQGGRRGRAPCRPRPAPPEPAPPSRSPSAEALLPPRIEGGLLLSGGSSPVVETASSSSSVLLEVARIRTWIDFLPRVICNLLGHRRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGALSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKERARAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFEDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
Length1111
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-1.104
Instability index57.92
Isoelectric point6.89
Molecular weight126317.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03815
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     245.05|      37|      38|     306|     342|       1
---------------------------------------------------------------------------
  306-  342 (68.98/40.29)	SS...DWQEHTSADGKKYYYNKKTRQSSWEKPA.....EL.MTPLE
  347-  383 (59.86/33.94)	ST...EWKEFTTQEGRKYYYNKVTKQSKWTIPD.....EL.KIARE
  389-  431 (36.90/17.96)	SNprpDQETETTAGAPSGPTSNSVEPSSV..PAnqsstTI.MGALS
  446-  474 (41.19/20.94)	PS...HNMENTSSSSNTAMQNGG........PS.....TV.VTPVI
  500-  531 (38.12/18.80)	TA...DTQNGASAE..ELEEAKKT....MAVPG.....KInVTPVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      87.43|      15|      15|     961|     975|       2
---------------------------------------------------------------------------
  961-  975 (25.87/14.70)	KEKEREEKERRKEKE
  977-  991 (26.48/15.27)	KEKERKEKERDKEKE
  992- 1006 (16.99/ 6.29)	REKDKGKDRSRKDEM
 1014- 1028 (18.10/ 7.34)	DSHGSKDKKREKDKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.23|      17|      20|     199|     218|       3
---------------------------------------------------------------------------
  199-  216 (32.42/15.85)	FRPViHQQQP.PQFMQPGQ
  218-  235 (25.81/ 7.44)	FRPV.GQAMPgANIGMPGQ
  237-  250 (19.99/ 9.29)	..P..HFQQP.TQHLPHSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.77|      41|      75|     670|     712|       4
---------------------------------------------------------------------------
  559-  598 (38.92/15.15)	SN.VESDWTWDQAMRVIIN........................dKRYGAlKTLGERKQAFNEY...LN.
  626-  693 (47.56/24.26)	SKELTSSTRWSKAITMFEDderfsaverpreredlfesylmelqKKERA.RAAEEHKRHIAEYraFLES
  901-  938 (46.29/19.17)	IKEISASSTWDDSKALFED........................sQEYKA.LDSETYSRE......LFEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.97|      22|      46|    1030|    1051|       6
---------------------------------------------------------------------------
 1041- 1072 (26.95/10.80)	DVSSE...RDEKDDskksrRHssdrkKSRKHTHAS
 1073- 1097 (31.03/13.45)	DSDSEnrhKRHKKD.....RD.....SSRRNGTRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.38|      25|     139|     601|     625|       7
---------------------------------------------------------------------------
  601-  618 (21.07/ 6.31)	...........KKLEAEERRIKQRKARDD
  761-  782 (22.28/ 7.02)	FRKMLEEhvaeGMLTAKTR...WR....D
  783-  808 (26.02/ 9.23)	YCAQVKD...sSVYLAVASNISGSMPKDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     137.43|      23|      51|      50|      72|       8
---------------------------------------------------------------------------
    7-   25 (26.45/ 7.71)	....YPAPSHGPRQERGVCIGNP
   29-   46 (23.92/ 6.31)	..DPNPTPPA..LCLTRRPHPL.
   50-   72 (45.59/18.28)	KPQPHPTPPSPPACGDNAAASLP
  104-  126 (41.47/16.01)	RPRPAPPEPAPPSRSPSAEALLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.12|      13|      74|     874|     886|       9
---------------------------------------------------------------------------
  743-  755 (18.84/ 8.45)	KRIHKEQ.VRRQER
  874-  886 (20.48/ 9.86)	ERLREKE.VKEAKK
  945-  958 (17.80/ 7.56)	ERLKEKErLREEEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03815 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATVISQGGRRGRAPCRPRPAPPEPAPPSRSPSAEALLPPRIE
2) ERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
3) HRRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQS
4) LTRRPHPLFALKPQPHPTPPSPPACGDNAA
5) TIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGALSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYAN
89
951
176
39
373
130
1111
329
68
544










Molecular Recognition Features






MoRF SequenceStartStop




NANANA