<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03812

Description Uncharacterized protein
SequenceMEGGGAGSGMERWREMFRGADIYDVIRNAILIAGADSPRELLRRRQGIIEWLFAVAPVTVPVPAPLACGRVVDGAGNRLPPAAIPDGGGHHHDDNDGNFAAAEAQTSLIDQQILEALYDEIEEDTQVINEVLRIKDILINYKEQSVDTLFDGLRRLQLMRLSISVLKSTQIAEAVAPLNKHRSPVICKIARDLAKGWKGVAADWVGPSSANADTSPDISNPSTVEDDFGLPTPPMDVGAFFLPQSAAEQYVSEFLHKADDDDDESLIPNAKNDCGFGGYKMEIAKPVANMDENILRKGKDLSRQHGHPMRQANLQMKLVDPNVNTIPKIHGLPTKQTPPLRQTNLQLGKTQGPRLHIKPASRFSIVTTKPNKPTHSQYTSRSQFSEETQNKYGLGTKPKQAQHHAIAITEQRPIAVVRKPLPDHVSKLERQATILEGYKVGIGKRNNTDIADLRLEATKRKLNDAYQEAENS
Length472
PositionUnknown
OrganismOryza rufipogon (Brownbeard rice) (Asian wild rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.526
Instability index47.36
Isoelectric point6.52
Molecular weight51982.24
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03812
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.93|      26|      29|     291|     317|       1
---------------------------------------------------------------------------
  263-  285 (28.26/14.83)	.....DESL..IPNAKNDCGFGGYKMEIAK..
  286-  315 (41.16/21.90)	PvanmDENI..LRKGKDLSRQHGHPMRQANLQ
  317-  346 (35.51/22.55)	K..lvDPNVntIPKIHGLPTKQTPPLRQTNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      15|      29|     172|     186|       3
---------------------------------------------------------------------------
  172-  186 (26.82/16.79)	AEAVAP..LNKHRSPVI
  202-  218 (24.58/14.80)	ADWVGPssANADTSPDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.01|      23|      24|     410|     433|       4
---------------------------------------------------------------------------
  410-  433 (32.92/26.83)	EQRPIAVVRKPLPDhVSKLERQAT
  436-  458 (37.08/24.49)	EGYKVGIGKRNNTD.IADLRLEAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03812 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HIKPASRFSIVTTKPNKPTHSQYTSRSQFSEETQNKYGLGTKPKQAQHHAIAITEQRPIAVVRKPLPD
2) VANMDENILRKGKDLSRQHGHPMRQANLQMKLVDPNVNTIPKIHGLPTKQTPPLRQTNLQLGKTQGPR
356
287
423
354










Molecular Recognition Features






MoRF SequenceStartStop




NANANA