<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03806

Description Uncharacterized protein
SequenceMDFMIIRGWMLDMIDTTLAGLHVAERAYWKEFVDRVLKDTGSIDITASNLAVPTRLPVELQVLIKVIIHQILNTQPGAIPPLAFYWCCNQLLQHLVNSVGTLGQATVGSNVHGQQRCRAAGWSSGTPERLADRNVSEDGGIEGVGWRRNIREMNGKNGKIRETNASRESPRTLKPTGQPNPSTVGKRIQNNQQEQPAKVTISHPWQNITDRRSAYQQSHIDNLVNHEEDETKRQKEQSVDIALSYEINLINAELFDTVIRIDSHRDGGTVIKFSYTAVSLARDMELPFTAYGASPLKPAKLFVPADYPRSSPVLCINDDDGDEQHQGMYSVISGIVDKAFRRALRKLPVPMSIRDMARQWGISVRTVMSGGGTFSTGYGQWGSCTDE
Length387
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.429
Instability index44.33
Isoelectric point7.12
Molecular weight43113.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03806
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.16|      19|      23|     110|     130|       1
---------------------------------------------------------------------------
  110-  128 (36.25/21.89)	NVHGQQRCRAAGWSSGTPE
  134-  152 (33.91/14.45)	NVSEDGGIEGVGWRRNIRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.44|      13|      27|      14|      26|       2
---------------------------------------------------------------------------
   14-   26 (22.21/14.81)	IDTTLAGLHVAER
   43-   55 (22.23/14.83)	IDITASNLAVPTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.96|      13|      18|     178|     195|       3
---------------------------------------------------------------------------
  178-  190 (24.16/18.97)	QPNPSTVGKRIQN
  195-  207 (25.80/11.04)	QPAKVTISHPWQN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03806 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IEGVGWRRNIREMNGKNGKIRETNASRESPRTLKPTGQPNPSTVGKRIQNNQQEQPAKVTISHPWQNITDRRSAYQQSHIDNLVNHEEDETKRQKEQ
141
237










Molecular Recognition Features






MoRF SequenceStartStop




NANANA