<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03805

Description Uncharacterized protein
SequenceMEAAYLGFGCAGGGGGGGIGGSGWVAVAGPEFRREVRSMDDYMRTISWNISNLGPQQPAPVHHHQQMQMRQQMSPAHPVQAVHHPVQAVQGGNSLVPAMPQAATNIAAPTRMPSQMQGIIKAKKQHSESTPMPEQVLNSQPGGITPSAPPPNKERSRRWRNQPGRRTAQPEGTQCQAQSNPAARVMLQNSAAVGRPNAQQVHLLRQNVSGGVSMQPTVSFQIQQQQQQEQLLMRMNHQRQMQMQMQRDQMHGTQQIRVPPPEPVTAVDHQQSNSSCLKPENPTTMESVEGVDRRDEIFQKISSLKDAYFSDLMELNISLVDLKMEDEELESLPKHAQAYGIKSSIRDRTRTALKFLQLQKSCIDERTEEELCRQESSINELMDFRRKREAVSIEIAGVHLPQLCQEPPQSPHLSFFGRDDHQSDEQEKPAQSSVSQLGQNNSDDATTFSSDFQQLLQKLQVGFFRQVLDERHEVKDFQKALDELPEDDVFQLLDQVHDDRAEAAVAKKRPFDHLINDDDAETAVADGPTPATGTESSPRSSPKKQKTDNGDSALVREIKAINDKLIDTMITVTAGDDGGDSGRTTSIRFTYTAVALASDMKKLITSCAGTSLVKSANLTVPADYPLSSPVLLDDEPPPPQQSGVDAAFQSALGELTEPRSIEQMARAWDASVRGAVAKFARRRGGGTFSSAYGRWKSCTGKG
Length702
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.697
Instability index67.23
Isoelectric point5.95
Molecular weight77257.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03805
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.59|      11|      17|     496|     506|       2
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  496-  506 (19.86/14.18)	VHDDRAEAAVA
  515-  525 (19.73/14.04)	INDDDAETAVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     108.58|      19|      19|      63|      81|       3
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   63-   81 (38.33/21.10)	HH..QQMQMRQQMS...........PAHPVQA
   83-  103 (25.17/11.15)	HHpvQAVQGGNSLV...........PAMPQAA
  237-  266 (25.66/11.51)	HQ..RQMQMQMQRDqmhgtqqirvpPPEPVTA
  268-  282 (19.41/ 6.79)	DH..QQ.SNSSCLK...........PENP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.76|      12|      17|     342|     353|       5
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  342-  353 (20.25/12.79)	KSSIRDRTRTAL
  360-  371 (21.51/13.99)	KSCIDERTEEEL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.18|      19|      22|     405|     425|       6
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  405-  425 (31.90/21.92)	QEPPQSPHLSFFGRDDhqSDE
  426-  444 (33.28/16.49)	QEKPAQSSVSQLGQNN..SDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.89|      20|      22|     451|     470|       7
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  451-  470 (34.92/26.33)	DFQQLLQKLQVGFFRQVLDE
  476-  495 (34.97/26.38)	DFQKALDELPEDDVFQLLDQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.05|       9|      19|     140|     150|       8
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  140-  150 (14.87/11.15)	QPGGITpsAPP
  162-  170 (19.18/ 7.63)	QPGRRT..AQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03805 with Med15 domain of Kingdom Viridiplantae
Unable to open file!