<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03804

Description Uncharacterized protein
SequenceMDPDGRLRRALAAFGGGADVWDLVDAALASAARDHPAELRARRDGIVERLYAAGGRCRSCDAPRSASPEAAAASPASPDEEADVNGLDDDEGGGMDSKILAIRDFLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKEIVDDWVRLHNSGGDGGSSILTDGDSPDKIQGRSYQNAQVSDFKYSPSPQRHNGLSSERSSNNNGIESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTMREQKDNLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKHR
Length335
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.894
Instability index63.19
Isoelectric point6.28
Molecular weight36851.34
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03804
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.76|      33|      37|       4|      37|       1
---------------------------------------------------------------------------
    4-   37 (53.66/35.91)	DGRLRRALAAfGGGADVWDLVDAALASAARDHPA
   44-   76 (60.11/35.69)	DGIVERLYAA.GGRCRSCDAPRSASPEAAAASPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.49|      20|      20|     233|     252|       2
---------------------------------------------------------------------------
  233-  252 (37.08/23.51)	SMIEKRRTSPAP..TYHNNKQN
  254-  275 (28.41/16.45)	SIGYSTTSSSAPvrTMREQKDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.42|      20|      82|      88|     111|       4
---------------------------------------------------------------------------
   88-  110 (33.57/23.01)	DD.....DEGGGMDSKILAIRDfleDPD
  169-  193 (32.85/14.98)	DDwvrlhNSGGDGGSSILTDGD...SPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.73|      12|      30|     277|     288|       6
---------------------------------------------------------------------------
  277-  288 (19.29/12.32)	MDLEKLDSARKR
  308-  319 (22.44/15.50)	MDIHDIPKPKNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03804 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DAPRSASPEAAAASPASPDEEADVNGLDDD
2) GGDGGSSILTDGDSPDKIQGRSYQNAQVSDFKYSPSPQRHNGLSSERSSNNNGIESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTMREQKDNLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKHR
61
178
90
335










Molecular Recognition Features






MoRF SequenceStartStop




1) DPDGRLRRALAAF
2) GGMDSKILAIRDFLEDPDQ
3) QVMDIHDIPKPKNRNAFIRKGGGGLPGKHR
4) RKWKEIV
2
93
306
162
14
111
335
168