<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03799

Description Uncharacterized protein
SequenceMEGAMFNLPGRLDELLRRHRSILPKGAEDEIPLIKQDLEEIISILHSHCSEPKLEDHAMVVKCWMKEVRELSYDIEDCIDQYEECIEQYEHVAAARYYIRRRKFNRRHGNKLPPWVPEKLKQRLWMANKIREFSLRVQEVIQRYAMYKNDLSGIPSTVSTTTTIISDISSSSSWHPAPGGRCGYVGFDAAMNKIEDWLTDGEHKKLKVVSIVGVGGVGKTTLANELYRKLGHQFEYRAFVRSSHKPDMRSILISMLSQIHPQQPPDNWKVHNLISSIRTHLKDKRYLIIIDDLWSTSTWDIISCTLPDGNSCSRILTTTEIEDLALQSCSYDSKYIFKMKPLGEDDSRNLFFSTVFGSRSTCPPELSEVSYDIVRKCGGLPLAVVTIASLLASRFEKQEQWDYMNKTLGYSLMANPSLEGMKQLLSLCYNSLPQHLKACMLYFSTYQEDTIIWKDDLVNQWIAEGFICAIEGHDMEEMSRAYFDELVGRKLIQPVHINNNGEVFSCLVHHMVLNLVRHTSAEENLIVAIDHAQATTRVADKVRRLSIHIGNVEDATSPTNMRLSQVRTLAFRGVLKCMSFITGFRLLKVLILHFWGDEDSISFDLTKISELVRLKYLKVTSNVTLKLPTAMQGLQYLETLQIDGKIGEVPSGIIHLLGLLHLSLPAKTNLPNGIVHMTSLRTLGYFDLSCNSAEILWSLGELTNLRDLQLTYSAIQSDNLKNNVQYLASILGKLHNLKSMTLSPAGSSYANALHTDSATSVRISVDGWSSVSSPPAHLQRFELLPCVCIFSSIPNWMGKLGNLCILKIGITEVTSNDVDVLRGLPVLTVLSLYVHKKPTGRIIFENVGFSILKYFKFRCMVAWMKFEAGAMPNLRKLKLCFDVHRADQHDIIPVGMEHLSRLEEISVKIKVACTVDDIYRRFVESALTNAIRMHPGQPSINIRCVDLTFDGKDDKNVGTREEESGTLQKQYHVVEECSTDKFVVLEKEPGGEADKSIESSKVDMEEASLAVADKVFVAVTGDIKHDKSTLQWALQNLAKDGAKFVIAHVHRPARMIPMMLGTKVHYTLMDPENLNAYRKMERQKAEVELDKYLLMCRKLKVSCEKQIIERDDTAEGLEDLIALHGITKLVMGAAADKHYSWNMSKLMSKTARKIWEAADPSCKIWFTCKGHLICTRETNATVPAVPPFKIGRLQKSCGYDSSRDGNTLWVSGSAMQQPMYGTSDDSLASPRELVKELENLYQEEIMLRKITEEELEKQIQETEENKGQCKTIYDKLHDVEEHKLMVENRLTEMQAVVEEHQKKEKLRQERDAAVKEAQELRWKNKQRISRLGEGLCTEFSSSELEQATRGYDEQVKIGVGAFGSVYKGTLRNTTVAIKLPYPYGRSGSIQGQLEEFEQEIAVLSRIRHPNIVTLIGACREASALVYEFLPEGSLEDHLACIKNKLPLTWQVRTKIIYEMCSALAFLHSVKPHPIVHGNLKPANILLDANLVSKLSDFGGICRFQTTGDMTPRGRGTSVYMDPEFQMMGILTPHSDVYSLGIIILHLLTGKPPPLGILEVVKHAIDNGELHSILDPSAGRWPPVQANQLAHLALRCTHINGRRRPNITGDVWNVVEPLMISATSLTAERPPPHYFICPIYKEVMRNPHIAADGFTYEAEAIRDWLARGHDKSPMTNLRLEHRQLIPNTSLRLAILEWQEKQSLLACLVLM
Length1709
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.234
Instability index47.38
Isoelectric point6.84
Molecular weight193386.99
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ADP binding	GO:0043531	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process
defense response	GO:0006952	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03799
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     230.97|      61|     286|     560|     623|       1
---------------------------------------------------------------------------
  560-  620 (98.54/70.60)	NM.R.LSQVRTLAFRG.VLKCMSF....ITGFRLLKVL.............ILHFWGDEDSISFDLT........KISELVRLKYLKVT
  630-  711 (72.92/52.06)	AM.QgLQYLETLQIDGkIGEVPSG....I..IHLLGLLhlslpaktnlpngIVHMTSLRTLGYFDLScnsaeilwSLGELTNLRDLQLT
  797-  879 (59.51/40.74)	.MgK.LGNLCILKI.G.ITEVTSNdvdvLRGLPVLTVL.slyvhkkptgriIFENVGFSILKYFKFRcmvawmkfEAGAMPNLRKLKL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     455.15|     147|     161|    1061|    1221|       2
---------------------------------------------------------------------------
 1067- 1221 (237.83/170.49)	TLMDPENL.....NAYRK..MERQKAEVELDKYLLMCRKLKVSCeKQIIER.DDTAEglEDLIALHGITKlvMGAAADKHysWNMSKLMSKTARKIWEAAD..PSCKIWFTCKGHLICTRETNATVPAVPPFKIGRLQKSCG.YDSSRDGnTLWVSGSAMQQPM.YG
 1226- 1384 (217.32/122.88)	SLASPRELvkeleNLYQEeiMLRKITEEELEKQIQETEENKGQC.KTIYDKlHDVEE..HKLMVENRLTE..MQAVVEEH..QKKEKLRQERDAAVKEAQElrWKNKQRISRLGEGLCTEFSSSELEQATRGYDEQVKIGVGaFGSVYKG.TLRNTTVAIKLPYpYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.31|      16|     235|     270|     296|       6
---------------------------------------------------------------------------
  279-  294 (29.69/31.78)	THLKDKRYLIIIDDLW
 1596- 1611 (31.62/ 7.86)	THINGRRRPNITGDVW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03799 with Med32 domain of Kingdom Viridiplantae
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