<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03798

Description Uncharacterized protein
SequenceMLMRRPVIIAAAAAAASSFLLLMITVDGQATTLPSPPAAIGNCKPRERDALLAFKEGIINDPAGLLSSWRRGQLQDCCRWRGVRCSNLTGHVVKLRLRNDHADVGTALVGEIGHSLISLEHLKYLDLSMNNLAGSTGQVPEFLGSFRSMRYLNLSGIMFTGMVPPQLGNLSNLRYLDLSGVRLSGMVSFLYISDASWLAHLSNLQHLNLNGVNLSTILDWPHALNMIPSLKFLSLSSCSLQTANQSLPQLNLNELEMLDLSNNDFNHPAESSWIWNLTSLKYLDLSSTSLYGDIPQALGNMLSLQVLDFSFDDHKDSMGMSMSKNGNMGTMKANLKNLCNLEVLDLDCRLEFGNITDIFQSLPECSPNKLKEVHLAGNNLTGMLPNWIGRLTSLVTLDLFNNSITGQVPSEIGMLTNLRNLYLHFNNMNGTITEKHFAHLTSLKSIYLCYNNLKIVMDPQWLPPFKLEKAYFASIRMGPSFPRWLQSQVDIVALAMNDAGINDTFPDWFSTTFSKAKLLEIPGNRISGGLPTNMENMSLEKLYLKSNQIASLIPRMPRNLTILDLSNNSLSGPLPLNIGSTNLAELNLLSNRITGNVPQSICELQNLHGLDLSNNLLHGEFPQCSGMSMMSFFRLSNNTFSGNFPSFLQGWTELSFLDLSWNKFSGNLPTWIGNFSKLEILRLKHNMFSGNIPASITKLGNLSHLDLASNSISGPLPQYLVNLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEYDEENVTVVTIDLSSNLLTGVIPEDITYLHGLINLNLSRNYLSGKIPYWIGHMKSLESLDLSKNKLYGEIPQSLSDLSSLSFLNLSYNNLMGRIPSGTQLGTLYDQNQHLYDGNDGLCGPPLQKSCYKSDASEQDHLMRSKQGFDIGPFSIGVVMGIMAGLWIVFYALLFMKSWRLLTSISWTRCMMRFELPNIEKKLLLFLVSVRACLVSARDICGTEHVWHATEHYDQWLGERSFTRYVCCTIANDRNAATSAILHALAVSSATARIGDGTEAFSATKLSTSTGMFLQQNNIGEQMQYTQAQCGLQEVPLSTTMDITAQTGHPGQCYLKDEIYDMIKRLKDQYFTELTDLYNKGALHFLEIEKDSIQPSLWGKIPKYERQIIYAISSQRKKPVNTQEQQFRQSSRKITNNIPQQQQDSPGSGDWQEDLYQMRNFTVIEYLEVPKFDTNFWYLEVRKVRNLKDQYFTELSYLYNKISMKLEYVDSQMASQTLTEHYGKMKDFKINKGDILPALREKIPEYERQIISILNSQRKEPVQTQGH
Length1299
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.09
Grand average of hydropathy-0.193
Instability index39.33
Isoelectric point6.34
Molecular weight146143.86
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03798
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            23|     613.32|      22|      22|     626|     647|       1
---------------------------------------------------------------------------
  122-  142 (19.84/ 7.30)	......LKYLDLSMNNLagsTGQV.......P...EF
  144-  166 (25.23/11.72)	GsF.RSMRYLNLSGIMF...TGMV.......P...PQ
  169-  189 (31.98/17.26)	N.L.SNLRYLDLSGVRL...SGMV...........SF
  200-  220 (25.32/11.79)	H.L.SNLQHLNLNGVNL...ST.I.......L...DW
  251-  273 (26.67/12.90)	N.L.NELEMLDLSNNDF.....NH.......PaesSW
  276-  297 (33.78/18.74)	N.L.TSLKYLDLSSTSL...YGDI.......P...QA
  337-  365 (21.09/ 8.32)	N.L.CNLEVLDLDCRLE...FGNItdifqslP...EC
  366-  387 (27.20/13.34)	S.P.NKLKEVHLAGNNL...TGML.......P...NW
  389-  411 (25.38/11.84)	GrL.TSLVTLDLFNNSI...TGQV.......P...SE
  413-  435 (22.23/ 9.25)	G.MlTNLRNLYLHFNNM...NGTI.......T...EK
  439-  461 (25.19/11.68)	H.L.TSLKSIYLCYNNL.....KI....vmdP...QW
  536-  556 (22.06/ 9.12)	N.M.S.LEKLYLKSNQI...ASLI.......P...RM
  557-  577 (25.62/12.04)	..P.RNLTILDLSNNSL...SGPL.......P...LN
  579-  600 (29.73/15.41)	G.S.TNLAELNLLSNRI...TGNV.......P...QS
  603-  623 (25.13/11.64)	E.L.QNLHGLDLSNNLL...HGEF.......P...Q.
  626-  647 (31.87/17.17)	G.M.SMMSFFRLSNNTF...SGNF.......P...SF
  650-  671 (38.46/22.59)	G.W.TELSFLDLSWNKF...SGNL.......P...TW
  673-  695 (24.90/11.45)	GnF.SKLEILRLKHNMF...SGNI.......P...AS
  698-  719 (30.83/16.32)	K.L.GNLSHLDLASNSI...SGPL.......P...QY
  762-  781 (19.03/ 6.63)	N.V.TVVT.IDLSSNLL...TGVI.......P...E.
  786-  806 (25.18/11.68)	..L.HGLINLNLSRNYL...SGKI.......P...YW
  808-  830 (28.78/14.63)	GhM.KSLESLDLSKNKL...YGEI.......P...QS
  833-  853 (27.81/13.84)	D.L.SSLSFLNLSYNNL...MGRI.......P...S.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.68|      59|     118|    1040|    1112|       2
---------------------------------------------------------------------------
 1040- 1112 (95.89/103.21)	TSTGMFLQQ.....NNIGEQMQYTQAQCGLQ...............EVP.LSTTmditaqtghpgqcYLKDEIYDmIKRLKDQYFTELTDLYNK
 1154- 1233 (93.80/66.91)	TQEQQFRQSsrkitNNIPQQQQDSPGSGDWQedlyqmrnftvieylEVPkFDTN.............FWYLEVRK.VRNLKDQYFTELSYLYNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.18|      41|     140|    1113|    1153|       3
---------------------------------------------------------------------------
 1113- 1153 (76.95/45.10)	GALHFLEIEKDSIQPSLWGKIPKYERQIIYAISSQRKKPVN
 1255- 1295 (75.23/43.94)	GKMKDFKINKGDILPALREKIPEYERQIISILNSQRKEPVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.43|      15|      25|     863|     877|       5
---------------------------------------------------------------------------
  863-  877 (30.35/15.90)	QNQHLYDGNDGL.CGP
  890-  905 (24.08/11.22)	EQDHLMRSKQGFdIGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.19|      16|     257|      61|      88|       8
---------------------------------------------------------------------------
   65-   85 (25.09/35.47)	LLSSWRrgqLQDCCRWrgVRC
  927-  942 (33.10/ 8.98)	FMKSWR...LLTSISW..TRC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03798 with Med15 domain of Kingdom Viridiplantae
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