<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03791

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGMVAGGREKSRPEPSTFHGANYPPNLRRQPQVAPYKLKCDKEPLNARLGAPDFYPQTSSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYFSKPDIAAKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALAQPNRHLWSLAEQVPRGFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQPSSNNVSSVAPDSLRAQHWTKDVIEYLQLLLDELCSKNGFFAPPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLFVPSLLIEWVFNQLQERDSAEVLEFLLPIVLSLVDIITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKMSSITSALVELLQYLILAVPDTFVSLDCFPLPSAVAPDVYGKGALLKITNGGRIASSRRQNASRHLSCGYAICSVQRRASDLSSVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCNFRDCRTSQCQNVKFSGSKDFSQIYMAVSLLKDKMDEINNLSSSKSNSQLAMKDHLKSGTLNHASIKVTAMENASGFRDCTSSIYENNKKDIFNSPGPLHDIIVCWLDQHEISDASGFKSVDVFMMELIRSGIFYPQTYVRQLIVSGITIWNGTLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDVNVEGRVPLSSCLHKQPDLQMDSRDDNHGRVVDQVEEVKFMISGREETKKTKKGQTGLVDSEDDVAYAKTGCKDSSRTKRQKLDKDVFPFQGSPLVQSDEEDIWWVRKEQKQELFTVETIHQSVEQTSGGKATVVQKTQNIAQIAAARIDGSQGASTSHVCDNNLSCPHRKPGTNSDILKDVDHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIIDTCCDLLSSARLLIWLLSKIYMGMTTSGQVGRGVTHPKHKENQVFQVAESFLFSSLLRYENILLAMDLLPEVLSVSMNRTVHKSGERQSASVAFAYARYFLRKYRDVASVARWERNFRSTSDKRLLAELDNGRSITGDSIISGISAGEELDGHVHKKLNGKAGVLPSMKEIVQRQTDEFLRNLKEKNTTAPKNPSYSETEDSYQTAHDIVLGLTDCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQYTLDIHINSLALLRETLGERFSRIFEISLAVEASSAVAASFAPPKAHRSQQSSETHDAGGNHANEVPSNPSKGFNVKAVKISAAVSALVVGAIIYGVVSLERMMVVLRLKEGLNILQFLRISKVSTNGVTHSIGNFKMDSSTEVLRTLPLGIVLPPAYSIFAMVLWRPYLYDASTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIIELRSPDECLKALSPLRARLFLNALLDCEIPVTMRDDGTYALEPGCAEVSTKNDVKFPDRLIEILNVLQPAKFHWQWVDLRLLLDEQSLIEKPKTVPYVKALRSLSPNAENFTLSEREKGLTEIILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDILLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVASIEEREVDGLIDSRKSSNSKSLNVATSPEGHGSTQKYLTQEALAELVLPCIDRSSSEFRFVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDVLFDCPSESLFDRLLCVLHALLGNSQPSWLKTKPSSKPFSHDLSAIDKEVIKSLQCALDRMELPATIRRRIQVTMPILPTSRLSSITCGPPLLSSAALSPFQCSASTAGPHQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTDDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2146
PositionKinase
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.229
Instability index47.54
Isoelectric point8.10
Molecular weight238003.02
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03791
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.52|      13|      15|    1132|    1145|       1
---------------------------------------------------------------------------
 1132- 1145 (19.43/15.73)	RQSASVAfAYARYF
 1150- 1162 (25.09/14.76)	RDVASVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.70|      12|      15|     454|     467|       2
---------------------------------------------------------------------------
  454-  467 (12.50/15.83)	IASSRRQnASrHLS
  472-  483 (22.20/13.06)	ICSVQRR.AS.DLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.14|      14|      15|     775|     788|       3
---------------------------------------------------------------------------
  775-  788 (23.54/14.61)	LSSGL..ATDVNVEGR
  791-  806 (21.60/12.68)	LSSCLhkQPDLQMDSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.18|      32|      36|    1685|    1720|       4
---------------------------------------------------------------------------
 1687- 1720 (51.64/36.19)	HLLGKlqESFVMGIK.WFLQGQDILLG....NNSVRQQL
 1722- 1758 (50.54/24.38)	NLTQR..KGFPMKTQfWKPWGWSKLVGyanaNKSSKRKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.83|      10|      36|    1266|    1276|       5
---------------------------------------------------------------------------
 1266- 1276 (16.51/13.19)	GGANPdGDHSL
 1300- 1309 (20.31/10.79)	GGNNP.GVTSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.56|      21|      36|     835|     856|       6
---------------------------------------------------------------------------
  835-  856 (30.70/28.01)	KGqTGLVDS.EDDVAYAKTGCKD
  873-  894 (33.86/25.14)	QG.SPLVQSdEEDIWWVRKEQKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.34|      34|      40|     608|     644|       7
---------------------------------------------------------------------------
  608-  644 (52.62/42.94)	SSSKSNSQlamKDHLKS.GTLNHASI...KVTAMENASGFR
  648-  685 (50.72/32.91)	SSIYENNK...KDIFNSpGPLHDIIVcwlDQHEISDASGFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      22.03|       8|      16|     977|     986|       8
---------------------------------------------------------------------------
  977-  986 ( 8.44/10.58)	KSLKrlRLLE
  996- 1003 (13.59/ 7.08)	KSIK..QLIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.67|      34|      37|    1389|    1425|       9
---------------------------------------------------------------------------
 1389- 1424 (48.20/43.02)	GFNV.KAVKISAAVSALVVGAIiyGVVSLERMMVVLR
 1428- 1462 (52.46/33.70)	GLNIlQFLRISKVSTNGVTHSI..GNFKMDSSTEVLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.40|      17|      17|      74|      90|      10
---------------------------------------------------------------------------
   54-   70 (16.30/ 6.13)	.PYKLKCDKEPLNARLgA
   74-   90 (29.63/17.02)	YPQTSSCAEETLTKEY.V
   94-  108 (22.47/11.16)	YKDTVEGIEE..AREI.V
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03791 with Med12 domain of Kingdom Viridiplantae
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