<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03789

Description Uncharacterized protein
SequenceMGLAARRSGGGFPHCVRSPPTARRATPMGSYEPAKASHSRLAVRRCYLLPARFRRLRRRRDVFIRVFAISKRRMQNLDNYLDQCSRKKVKAEKEVFFFTKTDEGLLHLIEIYGVTKLVMGAASDRHYKRKMKAPQSQTAITVMQRAHSYCNIWFICNGKLTCVREASCCPVTKSKSARLPYSVDSCKVDLQSLLEPNIEAKRLECMYINEMELRKETEAKLSQEKEESESLKHATVVLQSDLDWLKYQLNEKANRLQELNQQKHHLEHRISESDSVATYLEESMKVTESLVQSLKLEYSKMKRERDNAIKEARSMRMEKELTNSCAYGAISSEFSLMELEQATQNFSNALNIGQGGFGSVYKGSLRNTTVAIKMLSTDSLHGQSQFHQEVAILSRVRHPNLVTLIGACPEASALVYELLPNGSLEDRLNCVDNTLPLTWQVRIQIITEICSALIFLHKHRPHPVVHGDLKPGNILLDANLQSKLSDFGISRLLLESSVTGSDAHYTSRPMGTPAYMDPEFFATGELTPQSDTYSFGVTIMRLLTGRAPLRLIRTVREALNDDDLQSVLDNSAGDWPLVHAEQLARIALQCTELSKQRRPDLEHDVWEVIEPMKREAPSPLSQSFRSIFTECSSGIATATPSYFLCPISQVIMRDPQMAADGFTYEADAIRDWLDKGHDRSPVTNQTLANRETISNVALGSAIQEYLEQNKMNKVEPICSTSTWKLEMEGLNRKSSLPLRLLSPHFITASTTPSPPPPPPPAVAAEANLRKQLEQTLAGEPSSPLHHYNLGVFLWDRAEAEAAVAAREEGEDEEEARRLRGAAAEHFLAAAKLDPNDGVPFRFLGHHYARAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLDLEGKESLEVALCKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQHAIRGYPTCADLWEALGLAYHRLGMFTAAVKSYGRAIELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEMAPQNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEACEAAKVCTSLTGNLSCVWKLHGDAQLALARCFPWDDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEANIHNDTAICLDLIYTIEENNSLDPITWELQEKMSLGGLILEPVNKDFWVTLGSVSSNQALKQHSFIRALHLDMSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENYHQPGDGPVNESFESCLRAVQILPVPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHYPESHNINGLVSEVRSDFQSAIASYRRAKFALDMMRNSKTDSRCHTDISVNLARSLCKAGLATEAVQECEELKRQGFLNDDGLQIYALSLWKLGRRDEALSVSRNLAENLLSMKQESATAALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPPRLTSYEVMSEVYSNIALGKAIGGESDKFLRVDGGLTYLKKVLHMYPDCSLVRNQLGSLLLSSGGWMASHKAVRVTSLSQGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQYLSGYNAICHLQRWVHLEPWNQDARRLLVLALFQKAREEKYPKHICTILKRLILQVLSSGSNTQDNKVVHYGNYLLLLVASEVSLQSGDHGNCISQATEALGVTSSSVDSFFAHLQLCRAYVMQGNLLNSRSEYMKCLQNRTDTEIGWVLLKQLASICSLEGTPDEIEIHLRECIERKACAQCSVSNEDFASAEKAIAQACAEGDPDSCTLFLNGAICMNIAWRFAAPQFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSRAKWEKNLRLEWFSWPPELRPAELYFQMHLLATQSSAAASQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLVYVQ
Length1945
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.263
Instability index55.94
Isoelectric point7.96
Molecular weight216948.42
Publications









Function






Annotated function


GO - Cellular Component
Ski complex	GO:0055087	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process
RNA catabolic process	GO:0006401	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03789
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     207.44|      32|      32|    1169|    1200|       1
---------------------------------------------------------------------------
  841-  873 (30.47/16.57)	.RFLG...HHyarAGDAQRAAKCYQRAATLNPDDA....EA.
 1095- 1119 (40.89/25.36)	WRNTC...LL...AANGA..KFSYQRALHL.........TPW
 1128- 1163 (24.84/11.82)	AICLDliyTI...EENNSLDPITW..ELQEKMSLGglilEP.
 1169- 1200 (50.78/33.69)	WVTLG...SV...SSNQALKQHSFIRALHLDMSLS....EAW
 1203- 1234 (34.82/20.23)	...LG...KIyrhSGDKQLARQAFDRARSIDPSLA....LPW
 1242- 1263 (25.65/12.50)	YHQPG...DG...PVNESFE..SCLRAVQI............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.54|      37|      40|     949|     987|       2
---------------------------------------------------------------------------
  908-  944 (30.71/15.00)	....FRRLGYLQVHQKKWSEAIQslqhaI.....RGYPTC....AdLWEA..
  945-  981 (62.82/36.99)	LGLAYHRLGMFTAAVKSYGRAIE.....L.....DGSKVF....A.LIESGN
  984- 1018 (29.42/17.08)	LMLGYFRKG.....VEQFRSALE.....M..apqNHSAYFglasA.LL....
 1020- 1053 (36.59/19.60)	....WARQCVMTGA...FGWAAS.....LlkeacEAAKVC....T.SL.TGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.46|      19|      40|    1752|    1771|       3
---------------------------------------------------------------------------
 1752- 1771 (30.10/22.24)	KQLASICSlEGTPDEIEIHL
 1795- 1813 (35.36/21.69)	KAIAQACA.EGDPDSCTLFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.41|      26|      28|     558|     585|       5
---------------------------------------------------------------------------
  558-  585 (39.56/29.06)	ALNDDDL..QSVLDNSAGDWPLVhaEQLAR
  587-  614 (42.85/24.93)	ALQCTELskQRRPDLEHDVWEVI..EPMKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.32|      17|      45|     481|     500|       6
---------------------------------------------------------------------------
  481-  500 (23.60/22.31)	QSKLSDFGISRLLLessVTG
  529-  545 (30.72/19.68)	QSDTYSFGVTIMRL...LTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.68|      58|    1270|     143|     204|       7
---------------------------------------------------------------------------
  143-  204 (96.78/79.27)	MQRAHSYCNIWFICNGKLTCVREASCCPVTKSKSARLPYSVDsCKVDLQSL..LEPNieaKRLE
 1414- 1473 (92.90/63.80)	MKQESATAALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQ.LKFIISALdaLQPN...KRFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.92|      20|      32|    1354|    1373|       9
---------------------------------------------------------------------------
 1354- 1373 (34.15/24.75)	ARSLCKAGLATEAVQECEEL
 1388- 1407 (33.77/24.37)	ALSLWKLGRRDEALSVSRNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.51|      27|      32|      37|      63|      10
---------------------------------------------------------------------------
   37-   63 (46.25/32.63)	SHSRLAVRRCYLLPARFRRLRRRRDVF
   70-   96 (45.26/31.74)	SKRRMQNLDNYLDQCSRKKVKAEKEVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.28|      20|      32|     283|     304|      11
---------------------------------------------------------------------------
  283-  304 (27.77/23.68)	SMKVTESLVQSlkLEYSKMKRE
  314-  333 (34.51/22.65)	SMRMEKELTNS..CAYGAISSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.38|      15|      32|     668|     682|      13
---------------------------------------------------------------------------
  668-  682 (28.28/17.92)	AIRDWLD..KGHDRSPV
  701-  717 (21.09/11.48)	AIQEYLEqnKMNKVEPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.94|      18|      33|     216|     233|      16
---------------------------------------------------------------------------
  216-  233 (27.01/18.11)	ETEAKLSQEKEESESLKH
  251-  268 (29.92/20.98)	EKANRLQELNQQKHHLEH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03789 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HFITASTTPSPPPPPPPAVAAEANLRKQLEQTLAGEP
744
780










Molecular Recognition Features






MoRF SequenceStartStop




NANANA