<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03789

Description Uncharacterized protein
SequenceMGLAARRSGGGFPHCVRSPPTARRATPMGSYEPAKASHSRLAVRRCYLLPARFRRLRRRRDVFIRVFAISKRRMQNLDNYLDQCSRKKVKAEKEVFFFTKTDEGLLHLIEIYGVTKLVMGAASDRHYKRKMKAPQSQTAITVMQRAHSYCNIWFICNGKLTCVREASCCPVTKSKSARLPYSVDSCKVDLQSLLEPNIEAKRLECMYINEMELRKETEAKLSQEKEESESLKHATVVLQSDLDWLKYQLNEKANRLQELNQQKHHLEHRISESDSVATYLEESMKVTESLVQSLKLEYSKMKRERDNAIKEARSMRMEKELTNSCAYGAISSEFSLMELEQATQNFSNALNIGQGGFGSVYKGSLRNTTVAIKMLSTDSLHGQSQFHQEVAILSRVRHPNLVTLIGACPEASALVYELLPNGSLEDRLNCVDNTLPLTWQVRIQIITEICSALIFLHKHRPHPVVHGDLKPGNILLDANLQSKLSDFGISRLLLESSVTGSDAHYTSRPMGTPAYMDPEFFATGELTPQSDTYSFGVTIMRLLTGRAPLRLIRTVREALNDDDLQSVLDNSAGDWPLVHAEQLARIALQCTELSKQRRPDLEHDVWEVIEPMKREAPSPLSQSFRSIFTECSSGIATATPSYFLCPISQVIMRDPQMAADGFTYEADAIRDWLDKGHDRSPVTNQTLANRETISNVALGSAIQEYLEQNKMNKVEPICSTSTWKLEMEGLNRKSSLPLRLLSPHFITASTTPSPPPPPPPAVAAEANLRKQLEQTLAGEPSSPLHHYNLGVFLWDRAEAEAAVAAREEGEDEEEARRLRGAAAEHFLAAAKLDPNDGVPFRFLGHHYARAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLDLEGKESLEVALCKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQHAIRGYPTCADLWEALGLAYHRLGMFTAAVKSYGRAIELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEMAPQNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEACEAAKVCTSLTGNLSCVWKLHGDAQLALARCFPWDDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEANIHNDTAICLDLIYTIEENNSLDPITWELQEKMSLGGLILEPVNKDFWVTLGSVSSNQALKQHSFIRALHLDMSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENYHQPGDGPVNESFESCLRAVQILPVPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHYPESHNINGLVSEVRSDFQSAIASYRRAKFALDMMRNSKTDSRCHTDISVNLARSLCKAGLATEAVQECEELKRQGFLNDDGLQIYALSLWKLGRRDEALSVSRNLAENLLSMKQESATAALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPPRLTSYEVMSEVYSNIALGKAIGGESDKFLRVDGGLTYLKKVLHMYPDCSLVRNQLGSLLLSSGGWMASHKAVRVTSLSQGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQYLSGYNAICHLQRWVHLEPWNQDARRLLVLALFQKAREEKYPKHICTILKRLILQVLSSGSNTQDNKVVHYGNYLLLLVASEVSLQSGDHGNCISQATEALGVTSSSVDSFFAHLQLCRAYVMQGNLLNSRSEYMKCLQNRTDTEIGWVLLKQLASICSLEGTPDEIEIHLRECIERKACAQCSVSNEDFASAEKAIAQACAEGDPDSCTLFLNGAICMNIAWRFAAPQFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSRAKWEKNLRLEWFSWPPELRPAELYFQMHLLATQSSAAASQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLVYVQ
Length1945
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.263
Instability index55.94
Isoelectric point7.96
Molecular weight216948.42
Publications









Function






Annotated function


GO - Cellular Component
Ski complex	GO:0055087	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process
RNA catabolic process	GO:0006401	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03789
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     207.44|      32|      32|    1169|    1200|       1
---------------------------------------------------------------------------
  841-  873 (30.47/16.57)	.RFLG...HHyarAGDAQRAAKCYQRAATLNPDDA....EA.
 1095- 1119 (40.89/25.36)	WRNTC...LL...AANGA..KFSYQRALHL.........TPW
 1128- 1163 (24.84/11.82)	AICLDliyTI...EENNSLDPITW..ELQEKMSLGglilEP.
 1169- 1200 (50.78/33.69)	WVTLG...SV...SSNQALKQHSFIRALHLDMSLS....EAW
 1203- 1234 (34.82/20.23)	...LG...KIyrhSGDKQLARQAFDRARSIDPSLA....LPW
 1242- 1263 (25.65/12.50)	YHQPG...DG...PVNESFE..SCLRAVQI............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.54|      37|      40|     949|     987|       2
---------------------------------------------------------------------------
  908-  944 (30.71/15.00)	....FRRLGYLQVHQKKWSEAIQslqhaI.....RGYPTC....AdLWEA..
  945-  981 (62.82/36.99)	LGLAYHRLGMFTAAVKSYGRAIE.....L.....DGSKVF....A.LIESGN
  984- 1018 (29.42/17.08)	LMLGYFRKG.....VEQFRSALE.....M..apqNHSAYFglasA.LL....
 1020- 1053 (36.59/19.60)	....WARQCVMTGA...FGWAAS.....LlkeacEAAKVC....T.SL.TGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.46|      19|      40|    1752|    1771|       3
---------------------------------------------------------------------------
 1752- 1771 (30.10/22.24)	KQLASICSlEGTPDEIEIHL
 1795- 1813 (35.36/21.69)	KAIAQACA.EGDPDSCTLFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.41|      26|      28|     558|     585|       5
---------------------------------------------------------------------------
  558-  585 (39.56/29.06)	ALNDDDL..QSVLDNSAGDWPLVhaEQLAR
  587-  614 (42.85/24.93)	ALQCTELskQRRPDLEHDVWEVI..EPMKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.32|      17|      45|     481|     500|       6
---------------------------------------------------------------------------
  481-  500 (23.60/22.31)	QSKLSDFGISRLLLessVTG
  529-  545 (30.72/19.68)	QSDTYSFGVTIMRL...LTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.68|      58|    1270|     143|     204|       7
---------------------------------------------------------------------------
  143-  204 (96.78/79.27)	MQRAHSYCNIWFICNGKLTCVREASCCPVTKSKSARLPYSVDsCKVDLQSL..LEPNieaKRLE
 1414- 1473 (92.90/63.80)	MKQESATAALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQ.LKFIISALdaLQPN...KRFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.92|      20|      32|    1354|    1373|       9
---------------------------------------------------------------------------
 1354- 1373 (34.15/24.75)	ARSLCKAGLATEAVQECEEL
 1388- 1407 (33.77/24.37)	ALSLWKLGRRDEALSVSRNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.51|      27|      32|      37|      63|      10
---------------------------------------------------------------------------
   37-   63 (46.25/32.63)	SHSRLAVRRCYLLPARFRRLRRRRDVF
   70-   96 (45.26/31.74)	SKRRMQNLDNYLDQCSRKKVKAEKEVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.28|      20|      32|     283|     304|      11
---------------------------------------------------------------------------
  283-  304 (27.77/23.68)	SMKVTESLVQSlkLEYSKMKRE
  314-  333 (34.51/22.65)	SMRMEKELTNS..CAYGAISSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.38|      15|      32|     668|     682|      13
---------------------------------------------------------------------------
  668-  682 (28.28/17.92)	AIRDWLD..KGHDRSPV
  701-  717 (21.09/11.48)	AIQEYLEqnKMNKVEPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.94|      18|      33|     216|     233|      16
---------------------------------------------------------------------------
  216-  233 (27.01/18.11)	ETEAKLSQEKEESESLKH
  251-  268 (29.92/20.98)	EKANRLQELNQQKHHLEH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03789 with Med32 domain of Kingdom Viridiplantae
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