<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03787

Description Uncharacterized protein
SequenceMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLASEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFLGPNFDQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSSNSRNMVTSPTNSSPSPSNNQGNQGGVASTTGSSQMQEWVQGAIAKISNNADGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHFMNSKTEDNTSAVRSGLGAAKLEDGTTSRGQMVLGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPASQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMAQLKINGSTNRHLSDMEEDGDSSFGIQSLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length957
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.155
Instability index45.23
Isoelectric point6.02
Molecular weight102993.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03787
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.97|      13|      15|     544|     556|       2
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  544-  556 (23.43/11.21)	SPSNNQGNQGGVA
  561-  573 (23.54/11.30)	SSQMQEWVQGAIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.79|      32|      33|     147|     179|       3
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  111-  132 (30.26/11.08)	......YVSPEA.AAQSATTTT.......WGSGVTS
  147-  179 (56.88/30.87)	VIVEGQYMSPYD.PDEGPSITGW..RVQcWESSVQP
  180-  212 (46.65/20.56)	VVLHPIFGSPANfGGQPPTQTVWstRVN...KSIPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.55|      55|     432|      20|      76|       4
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   20-   76 (89.40/59.67)	LVNPSTVV..VWEVMPGLGNGIqATAKINATSSLPPSLNPPLWAgFAPLASYLFS.LQDY
  453-  510 (86.15/49.11)	LINPSTLLpePWQASSDMLSSI.GPDKMTVDPALLLSIQGYVDA.VLDLASHFITrLRRY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.76|      22|      29|     304|     325|       5
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  304-  325 (43.23/23.38)	PPAFSSSGCCLAS.VWHDTLKDR
  335-  357 (34.53/17.33)	PPAILNAQTKVSSaVWERAIADR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.29|      42|     206|     378|     421|       7
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  378-  421 (65.75/57.23)	AAEDGIVSLNS..VIALLDADFHCLPTIQQRQQhCPNLDRIkCRLL
  585-  628 (72.54/52.15)	AAPNPISGRSSfmPISINTGTFPGTPAVRLIGD.CHFLHRL.CQLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03787 with Med16 domain of Kingdom Viridiplantae
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