<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03786

Description Uncharacterized protein
SequenceMTSSSAPNPSPLVPTPTPTPTPSPPATATAAGAVPVSSPPPPPPKDQQQEGGGGVGDGGGGGGGVEEVGVGGGEAMEVDGGGGGGGVGDVEGGGGGGGAGGGGGGGQQPSPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPINLVRDASSWQCEHEWRQDLSVVTKWLSGISSYRWLPANSSTSSNSKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLASEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFLGPNFDQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSSNSRNMVTSPTNSSPSPSNNQGNQGGVASTTGSSQMQEWVQGAIAKISNNADGAANAAPNPISGRRQSPRIPANAQKSSDSSMQKQHFMNSKTEDNTSAVRSGLGAAKLEDGTTSRGQMVLGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPASQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMAQLKINGSTNRHLSDMEEDGDSSFGIQSLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVALPGMFIKVISETMRLVI
Length1274
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.222
Instability index51.98
Isoelectric point6.13
Molecular weight135530.14
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03786
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.61|      16|      19|      57|      73|       1
---------------------------------------------------------------------------
   51-   69 (32.08/ 8.37)	GGG..gvgDGGGGGGGVEEVG
   71-   91 (31.53/11.12)	GGGeamevDGGGGGGGVGDVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.54|      34|     125|     368|     415|       2
---------------------------------------------------------------------------
  376-  409 (62.59/31.70)	PGLGNGIQA.TAKINATSSLPPSLNP....PLWAGFAPL
  502-  540 (53.95/27.89)	PDEGPSITGwRVQCWESSVQPVVLHPifgsPANFGGQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.47|      57|     113|     124|     188|       3
---------------------------------------------------------------------------
  109-  181 (83.87/58.19)	PSPATVFrirlkqppSSLR..HKMRvpelcRNFSAVA.WcgkLNAIACASETCAR.............IPSSNSSPPFWIPI...H..ILNPER
  182-  227 (32.14/11.56)	PTECSVF................................................nvkadsprdfvqfIEWSPRSCPRALLVanfHgrITIWTQ
  228-  292 (83.46/41.32)	PTKGPIN...lvrdaSSWQceHEWR.....QDLSVVTkW...LSGISSYRWLPAN.............SSTSSNSKTFEEKF...L..TQQPQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     205.72|      53|     110|     845|     897|       5
---------------------------------------------------------------------------
  845-  868 (21.72/ 6.23)	..............................................HFI.TRL.RRYASFCRTLASHAVGAS
  869-  929 (73.52/39.78)	SGSSNSRNMVTSPTNSSPSPSNNQGNQGG.........vasttgssQMQ.EWV.QGAIAKISNNADGAANAA
  934-  981 (50.94/25.15)	SGRRQSPRIPANAQKSSDSS......................mqkqHFMnSKT.EDNTSAVRS.GLGAAKLE
  982- 1052 (59.54/30.72)	DGTTSRGQMVLGAKGAEENPVGNKSARIGsgnagqgytsdevkvlfLIL.VDLcKRTATLQHPLPASQVGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.94|      14|     172|     568|     602|       8
---------------------------------------------------------------------------
  548-  562 (22.39/30.08)	RVNK.SIPPsEDLKNP
  584-  598 (23.55/12.95)	RANRlSFDP.YDLPND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.76|      19|      42|     308|     328|       9
---------------------------------------------------------------------------
  308-  328 (35.93/27.80)	SGSvqLHWSQWPSQN.SAQPRW
  353-  372 (29.84/16.11)	SGA..LHVAGVPLVNpSTVVVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.76|      22|      29|     647|     668|      10
---------------------------------------------------------------------------
  647-  668 (43.23/24.52)	PPAFSSSGCCLAS.VWHDTLKDR
  678-  700 (34.53/18.16)	PPAILNAQTKVSSaVWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.06|      10|      18|      16|      25|      11
---------------------------------------------------------------------------
   16-   25 (23.09/ 9.02)	PTPTPTPSPP
   35-   44 (22.97/ 8.93)	PVSSPPPPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.80|      18|      25|     786|     803|      12
---------------------------------------------------------------------------
  786-  803 (30.97/19.78)	DMLGK.GIESALINPSTLL
  812-  830 (27.83/16.96)	DMLSSiGPDKMTVDPALLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03786 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASSGSSNSRNMVTSPTNSSPSPSNNQGNQGGVASTTGSSQ
2) MTSSSAPNPSPLVPTPTPTPTPSPPATATAAGAVPVSSPPPPPPKDQQQEGGGGVGDGGGGGGGVEEVGVGGGEAMEVDGGGGGGGVGDVEGGGGGGGAGGGGGGGQQPSPATVFRIRLKQPP
3) SNNADGAANAAPNPISGRRQSPRIPANAQKSSDSSMQKQHFMNSKTEDNTSAVRSGLGAAKLEDGTTSRGQMVLGAKGAEENPVGNKSARIGSGNAG
867
1
919
906
123
1015










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLKQ
114
121